Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC0.09□□□□□ -2.4
CHKB-CPT1BH3BT56 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.09□□□□□ -2.4
CHKB-CPT1BH3BT56 AF038458.1-201ENST00000588406 262 ntBASIC0.09□□□□□ -2.4
CHKB-CPT1BH3BT56 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC0.09□□□□□ -2.4
CHKB-CPT1BH3BT56 AC084824.4-201ENST00000620106 731 ntBASIC0.09□□□□□ -2.4
CHKB-CPT1BH3BT56 RNU6-512P-201ENST00000364438 103 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 Y_RNA.332-201ENST00000365271 113 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 RNU6-359P-201ENST00000365466 108 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 RNU6-1176P-201ENST00000390955 107 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 MIR1295A-201ENST00000408463 79 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 MTCO1P57-201ENST00000432182 261 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 MTND1P30-201ENST00000441241 901 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 MTATP6P30-201ENST00000443540 664 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 MTND1P9-201ENST00000453775 944 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 snoU13.27-201ENST00000459278 104 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 snoU13.14-201ENST00000459372 104 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 HMGB1P30-201ENST00000492455 606 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC108740.1-201ENST00000498629 225 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC034244.1-201ENST00000507687 207 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC079140.3-201ENST00000511111 550 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC022861.1-201ENST00000522981 663 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC098848.2-201ENST00000588023 330 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC022022.2-201ENST00000602989 360 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC025754.2-201ENST00000606491 432 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC017083.3-201ENST00000609955 700 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 AC106730.3-201ENST00000624568 641 ntBASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.08□□□□□ -2.4
CHKB-CPT1BH3BT56 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AC090625.1-201ENST00000357130 210 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 RNU6-28P-201ENST00000362378 107 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 Y_RNA.40-201ENST00000362645 93 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 RNU6-288P-201ENST00000363690 104 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 Y_RNA.327-201ENST00000365201 102 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AF228730.1-201ENST00000397972 663 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 HMGN1P14-201ENST00000412459 517 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 ZNF965P-201ENST00000432501 817 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 MTCO3P45-201ENST00000443036 613 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 NEFMP1-201ENST00000443423 1006 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 ATP5J2P3-201ENST00000451550 258 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AL353752.1-201ENST00000454946 260 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 BTF3P15-201ENST00000455606 336 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 MED28P2-201ENST00000475771 317 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AC048334.1-201ENST00000477975 159 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AC113410.1-201ENST00000505029 247 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AC108078.2-201ENST00000510750 236 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 SNORA68.3-201ENST00000515906 83 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 RNU6-760P-201ENST00000516078 97 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AC023050.2-201ENST00000544968 387 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AP001981.2-201ENST00000603241 418 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 Z83818.1-201ENST00000603584 150 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AL451064.1-201ENST00000607718 471 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AC092106.3-201ENST00000611308 722 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 AC243829.6-201ENST00000612652 106 ntBASIC0.07□□□□□ -2.4
CHKB-CPT1BH3BT56 MIR378A-201ENST00000362177 66 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 RNU6-349P-201ENST00000362402 107 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 RNU6-223P-201ENST00000362830 107 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 RNU6-492P-201ENST00000363035 104 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 RNU6-487P-201ENST00000365430 104 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 Y_RNA.363-201ENST00000365529 113 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 MIR1289-2-201ENST00000408360 111 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 TPMTP2-201ENST00000414372 726 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 MTCO2P5-201ENST00000422621 426 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 Z82205.1-201ENST00000428456 297 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 TXNL1P1-201ENST00000429528 554 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 AC092628.1-201ENST00000436250 252 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 CALM1P1-201ENST00000442082 433 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 RPL39P6-201ENST00000448289 150 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 snoU13.30-201ENST00000458951 104 ntBASIC0.06□□□□□ -2.4
CHKB-CPT1BH3BT56 RPL39P38-201ENST00000467018 153 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms