Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 NDUFB4P6-201ENST00000436819 366 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 HMGN2P21-201ENST00000447764 270 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC012308.1-201ENST00000451232 178 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC007215.1-201ENST00000464893 276 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AL121594.1-201ENST00000475906 575 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC100770.1-201ENST00000532310 322 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC136624.4-201ENST00000573044 370 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 MIR3684-201ENST00000579779 74 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AL359198.2-201ENST00000611836 194 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AL357075.2-201ENST00000614906 189 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AL445567.2-201ENST00000618935 498 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC099654.7-201ENST00000635788 2127 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 Y_RNA.215-201ENST00000364204 112 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 RNA5SP175-201ENST00000364275 119 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 Y_RNA.498-201ENST00000384460 102 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 RNA5SP390-201ENST00000410191 113 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 AC138623.1-201ENST00000418060 216 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 RPL21P66-201ENST00000426566 466 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 RAB28P5-201ENST00000427490 651 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 AC009237.7-201ENST00000447357 229 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 SNRPGP7-201ENST00000469016 106 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 AC010618.1-201ENST00000469924 477 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 AC109327.1-201ENST00000471666 403 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 RN7SL41P-201ENST00000476144 297 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 RNA5SP73-201ENST00000516744 108 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 SNORA31.23-201ENST00000517219 133 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 AC115990.1-201ENST00000526957 301 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 MIR3653-201ENST00000625572 110 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 MIR6830-201ENST00000636015 70 ntBASIC4.54□□□□□ -1.68
USP3Q9Y6I4 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
USP3Q9Y6I4 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 RNU6-793P-201ENST00000384233 104 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 RNU6-131P-201ENST00000391144 107 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 HDGFP1-201ENST00000405943 252 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 FTH1P6-201ENST00000430768 320 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 HMGB1P37-201ENST00000439613 609 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 TPT1P12-201ENST00000448968 492 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 RN7SL385P-201ENST00000468873 276 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 HMGB3P3-201ENST00000510526 400 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 SUMO2P18-201ENST00000518873 252 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 AC009127.3-201ENST00000570531 403 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 AC009163.5-201ENST00000575421 637 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 FAM27D1-201ENST00000612308 341 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 MIR6716-201ENST00000613413 80 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.53□□□□□ -1.68
USP3Q9Y6I4 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP3Q9Y6I4 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
USP3Q9Y6I4 SNORA70.2-201ENST00000364506 135 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 Y_RNA.586-201ENST00000391146 98 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 FTH1P15-201ENST00000406984 280 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 MIR1911-201ENST00000410783 80 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 AC008267.6-201ENST00000441664 139 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.52□□□□□ -1.69
USP3Q9Y6I4 AL592156.1-201ENST00000508758 304 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms