Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS9D1Q9Y2B5 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 RNU6-140P-201ENST00000384566 108 ntBASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 AL139148.1-201ENST00000427122 680 ntBASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 AL358232.1-201ENST00000448030 501 ntBASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 AC023424.1-201ENST00000496058 459 ntBASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 IGKV2D-19-201ENST00000523346 262 ntBASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 IMMP1LP3-201ENST00000604197 224 ntBASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 AL021707.8-201ENST00000609428 183 ntBASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 SNORD98-201ENST00000636377 67 ntBASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS9D1Q9Y2B5 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 RPL23P2-201ENST00000320371 421 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 SNORA2.3-201ENST00000383920 135 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 RNU6-1323P-201ENST00000384025 107 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 CBX3P9-201ENST00000402326 552 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 RNA5SP390-201ENST00000410191 113 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 Y_RNA.593-201ENST00000410292 98 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 RNA5SP504-201ENST00000410676 117 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 AC104333.2-201ENST00000422630 192 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 AF228730.3-201ENST00000436691 102 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 RPL23AP54-201ENST00000495129 419 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 RN7SKP260-201ENST00000516907 149 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 RNA5SP490-201ENST00000517141 136 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 AC027176.1-201ENST00000560204 514 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 MIR3923-201ENST00000579521 83 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 MIR3136-201ENST00000583498 78 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 AL049861.1-201ENST00000603130 150 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 AL591034.3-201ENST00000605511 685 ntBASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS9D1Q9Y2B5 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
VPS9D1Q9Y2B5 ZNF137P-201ENST00000456718 1920 ntBASIC5.09□□□□□ -1.6
VPS9D1Q9Y2B5 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.6
VPS9D1Q9Y2B5 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 DLEU2_6.3-201ENST00000340052 136 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 Y_RNA.78-201ENST00000362970 110 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 RNU6-674P-201ENST00000363831 107 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 Y_RNA.342-201ENST00000365352 113 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 RNA5SP235-201ENST00000365411 114 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 MIR624-201ENST00000385217 97 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 MIR1286-201ENST00000408112 78 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 RNA5SP127-201ENST00000411051 133 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 AC004866.1-201ENST00000411748 78 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 RPL35AP21-201ENST00000437667 333 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 AL591623.2-201ENST00000449978 222 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 AC073073.1-201ENST00000493920 463 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 RNU6-365P-201ENST00000517113 106 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 AC009163.5-201ENST00000575421 637 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 DLEU2_6.2-201ENST00000620994 136 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 U2.21-201ENST00000637295 81 ntBASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS9D1Q9Y2B5 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 Y_RNA.634-201ENST00000364811 113 ntBASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms