Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 LINC01355-201ENST00000566551 5444 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
CNTN3Q9P232 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
CNTN3Q9P232 RNY4P28-201ENST00000365281 93 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 RNA5SP283-201ENST00000365604 119 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 SNORA29-201ENST00000384183 140 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 MIR513A2-201ENST00000385249 127 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 RPL21P65-201ENST00000406094 466 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 MTHFD2P2-201ENST00000407725 247 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 Y_RNA.626-201ENST00000411288 95 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 RPL23AP95-201ENST00000426806 265 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 AC098831.1-201ENST00000440661 216 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 RPL37P4-201ENST00000448908 268 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 MRPL42P6-201ENST00000486397 371 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 AF186996.7-201ENST00000492781 209 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.45□□□□□ -1.7
CNTN3Q9P232 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.45□□□□□ -1.7
CNTN3Q9P232 MIR4423-201ENST00000580922 80 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 MIR3133-201ENST00000583157 78 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 MIR5684-201ENST00000585074 65 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 BRDTP1-201ENST00000605735 677 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 MIR7702-201ENST00000621931 59 ntBASIC4.45□□□□□ -1.7
CNTN3Q9P232 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CNTN3Q9P232 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CNTN3Q9P232 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CNTN3Q9P232 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CNTN3Q9P232 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CNTN3Q9P232 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CNTN3Q9P232 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
CNTN3Q9P232 FAM35BP-202ENST00000497389 3337 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
CNTN3Q9P232 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.44□□□□□ -1.7
CNTN3Q9P232 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
CNTN3Q9P232 MIR448-201ENST00000362131 111 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 RNU6-778P-201ENST00000363269 103 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 RNU6-898P-201ENST00000365627 104 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CNTN3Q9P232 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CNTN3Q9P232 RNU6-21P-201ENST00000384710 107 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 Y_RNA.569-201ENST00000384749 103 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 MIR325-201ENST00000385260 98 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
CNTN3Q9P232 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.44□□□□□ -1.7
CNTN3Q9P232 HMGN2P30-201ENST00000423237 256 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 AL512844.2-201ENST00000433990 593 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC4.44□□□□□ -1.7
CNTN3Q9P232 AL353748.1-201ENST00000440753 474 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC4.44□□□□□ -1.7
CNTN3Q9P232 AL162151.2-201ENST00000448875 158 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 AC025445.1-201ENST00000502728 300 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 AC097462.2-201ENST00000504623 481 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 RNU6-255P-201ENST00000516957 105 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 CR383656.8-201ENST00000549046 145 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.44□□□□□ -1.7
CNTN3Q9P232 AC010620.2-201ENST00000600135 313 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 AL138963.2-201ENST00000605137 226 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 AC005296.1-201ENST00000616145 209 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC4.44□□□□□ -1.7
CNTN3Q9P232 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.43□□□□□ -1.7
CNTN3Q9P232 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CNTN3Q9P232 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
CNTN3Q9P232 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
CNTN3Q9P232 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.43□□□□□ -1.7
CNTN3Q9P232 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.43□□□□□ -1.7
CNTN3Q9P232 SNORA60-201ENST00000362396 134 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 RNU5B-2P-201ENST00000363036 113 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 SNORD32A-201ENST00000364805 84 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 RNU1-73P-201ENST00000383971 164 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 RN7SKP53-201ENST00000411337 315 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 HSPE1P12-201ENST00000412576 301 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.43□□□□□ -1.7
CNTN3Q9P232 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.43□□□□□ -1.7
CNTN3Q9P232 AL356535.1-201ENST00000440335 398 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC4.43□□□□□ -1.7
CNTN3Q9P232 SSXP4-201ENST00000451349 245 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 AC073901.1-201ENST00000462471 408 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CNTN3Q9P232 AC072026.1-201ENST00000605023 201 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 MIR6134-201ENST00000617606 109 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.43□□□□□ -1.7
CNTN3Q9P232 AF117829.1-206ENST00000621883 3802 ntBASIC4.43□□□□□ -1.7
CNTN3Q9P232 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CNTN3Q9P232 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CNTN3Q9P232 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CNTN3Q9P232 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CNTN3Q9P232 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CNTN3Q9P232 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.42□□□□□ -1.7
CNTN3Q9P232 RN7SKP280-201ENST00000364196 304 ntBASIC4.42□□□□□ -1.7
CNTN3Q9P232 RNA5SP513-201ENST00000364648 118 ntBASIC4.42□□□□□ -1.7
CNTN3Q9P232 Y_RNA.292-201ENST00000364904 97 ntBASIC4.42□□□□□ -1.7
CNTN3Q9P232 Y_RNA.319-201ENST00000365138 92 ntBASIC4.42□□□□□ -1.7
CNTN3Q9P232 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
CNTN3Q9P232 SNORD116-20-201ENST00000384529 92 ntBASIC4.42□□□□□ -1.7
CNTN3Q9P232 MIR3074-201ENST00000384885 81 ntBASIC4.42□□□□□ -1.7
CNTN3Q9P232 MIR493-201ENST00000385254 89 ntBASIC4.42□□□□□ -1.7
CNTN3Q9P232 RNU6-628P-201ENST00000410675 107 ntBASIC4.42□□□□□ -1.7
CNTN3Q9P232 RNA5SP104-201ENST00000410989 118 ntBASIC4.42□□□□□ -1.7
CNTN3Q9P232 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.42□□□□□ -1.7
CNTN3Q9P232 COX6CP10-201ENST00000416832 224 ntBASIC4.42□□□□□ -1.7
CNTN3Q9P232 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 161 ms