Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC090096.1-201ENST00000489168 390 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 SNORA43.2-201ENST00000516652 128 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 Y_RNA.711-201ENST00000516993 102 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AP000867.2-201ENST00000532468 320 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.48□□□□□ -1.85
TDP1Q9NUW8 NACAP3-201ENST00000552100 481 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 SNRPGP18-201ENST00000553000 214 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AC005476.1-201ENST00000554427 397 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 MIR5004-201ENST00000579078 107 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 HMGN2P15-201ENST00000585707 270 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AC020895.1-201ENST00000595362 272 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AL162713.1-201ENST00000604480 262 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AC005046.1-201ENST00000608515 625 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AC011890.2-201ENST00000613393 294 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AC004852.3-201ENST00000614131 326 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 AC090617.7-201ENST00000623952 126 ntBASIC3.48□□□□□ -1.85
TDP1Q9NUW8 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.48□□□□□ -1.85
TDP1Q9NUW8 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
TDP1Q9NUW8 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.48□□□□□ -1.85
TDP1Q9NUW8 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.48□□□□□ -1.85
TDP1Q9NUW8 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 MIR423-201ENST00000362201 94 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 Y_RNA.31-201ENST00000362574 102 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 RNA5SP295-201ENST00000362655 121 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 RNU6-336P-201ENST00000364891 107 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 RNU1-100P-201ENST00000365255 165 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 SNORA48.5-201ENST00000391143 135 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AL357075.1-201ENST00000404107 726 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 RNU4-47P-201ENST00000410876 114 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 RHEBP3-201ENST00000411920 351 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 ARF4P2-201ENST00000430209 526 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 U8.21-201ENST00000459536 136 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 RPL23AP14-201ENST00000468281 468 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 SMURF2P1-201ENST00000514992 481 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 ACA59.1-201ENST00000515966 143 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 RNU6-976P-201ENST00000516086 111 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 SNORA70.19-201ENST00000516717 90 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AC022634.1-201ENST00000520765 532 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AC024153.1-201ENST00000603103 365 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AC018889.1-201ENST00000605372 397 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AC073657.2-201ENST00000605661 303 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AL138880.2-201ENST00000616214 239 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 AC022149.2-201ENST00000621061 203 ntBASIC3.47□□□□□ -1.85
TDP1Q9NUW8 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
TDP1Q9NUW8 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.46□□□□□ -1.85
TDP1Q9NUW8 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.46□□□□□ -1.85
TDP1Q9NUW8 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
TDP1Q9NUW8 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.46□□□□□ -1.85
TDP1Q9NUW8 CDC27P3-201ENST00000635418 1910 ntBASIC3.46□□□□□ -1.85
TDP1Q9NUW8 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.46□□□□□ -1.85
TDP1Q9NUW8 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.85
TDP1Q9NUW8 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
TDP1Q9NUW8 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 AC110491.1-201ENST00000562191 2010 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 RNA5SP374-201ENST00000362939 125 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 Y_RNA.112-201ENST00000363250 102 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 RNU6-596P-201ENST00000365395 98 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 U8.8-201ENST00000365399 135 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 RNU6-308P-201ENST00000390957 107 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 RPS29P13-201ENST00000402041 169 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 RNU6-174P-201ENST00000410406 106 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 PMCHL1-202ENST00000423102 261 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 AL714022.1-201ENST00000439897 151 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 HMGN2P10-201ENST00000448085 265 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 HMGN2P13-201ENST00000476476 274 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 AL163540.1-201ENST00000485382 386 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 PLCE1P1-201ENST00000622094 305 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 MTND5P30-201ENST00000452896 1731 ntBASIC3.46□□□□□ -1.86
TDP1Q9NUW8 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.46□□□□□ -1.86
TDP1Q9NUW8 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms