Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 HMGB1P35-201ENST00000503360 598 ntBASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 TBCAP3-201ENST00000512475 312 ntBASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 AC022616.8-201ENST00000533569 253 ntBASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 BNIP3P6-201ENST00000549284 499 ntBASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 AC009063.1-201ENST00000563342 702 ntBASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 AC091135.1-201ENST00000585943 307 ntBASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 AL356575.1-201ENST00000603008 283 ntBASIC3.12□□□□□ -1.91
CHMP4AQ9BY43 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 RNU6-78P-201ENST00000362897 107 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 RNY3P10-201ENST00000384764 102 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 RNA5SP465-201ENST00000391195 109 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 AF228730.1-201ENST00000397972 663 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 CBX3P6-201ENST00000430257 527 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 CR769767.1-201ENST00000436337 346 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 MTCO2P6-201ENST00000463134 685 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 BET1P1-201ENST00000482276 359 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 RN7SL636P-201ENST00000497504 294 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 OR5AL2P-201ENST00000532185 920 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 AC068790.2-201ENST00000602601 557 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 AC067747.1-201ENST00000608026 250 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 AL627230.6-201ENST00000611129 280 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 AL590808.1-201ENST00000618696 141 ntBASIC3.11□□□□□ -1.91
CHMP4AQ9BY43 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 RNU1-23P-201ENST00000363361 144 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 Y_RNA.480-201ENST00000384364 102 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 RNU6-45P-201ENST00000384471 107 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AL591034.2-201ENST00000402839 359 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 GSTA9P-201ENST00000406231 611 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 RNU6-195P-201ENST00000411352 109 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 PGBD4P6-201ENST00000421501 610 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AL596276.1-201ENST00000434465 418 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 MTND1P26-201ENST00000440488 538 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 GAPDHP17-201ENST00000449858 1001 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AC234781.5-201ENST00000508429 271 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 MTCYBP40-201ENST00000509390 1135 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 RNA5SP503-201ENST00000517047 117 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 RNU6-1220P-201ENST00000517126 108 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 RNU6-667P-201ENST00000517186 102 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AP002453.2-201ENST00000533503 320 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AL512310.1-201ENST00000548639 172 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AC103810.6-201ENST00000606708 136 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 MIR98-201ENST00000606724 119 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AL031601.2-202ENST00000622650 282 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 AC078883.4-201ENST00000623218 367 ntBASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.1□□□□□ -1.91
CHMP4AQ9BY43 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 RNU6-1222P-201ENST00000384615 107 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 RNU2-32P-201ENST00000411193 191 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 RNA5SP508-201ENST00000411327 119 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 SRIP3-201ENST00000413200 219 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AL158823.1-201ENST00000418441 478 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 MORF4L1P6-201ENST00000418771 268 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 ISCA1P6-201ENST00000427740 390 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 CETN4P-201ENST00000432407 469 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AC098826.1-201ENST00000433943 471 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 RPL30P1-201ENST00000488676 339 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 RPL23AP94-201ENST00000512518 302 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 RNU1-86P-201ENST00000516108 154 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 RNU1-107P-201ENST00000516617 154 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AC021269.2-201ENST00000532318 330 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AC007375.1-201ENST00000554513 578 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AC008945.2-201ENST00000606056 604 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AL159153.1-201ENST00000619688 317 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 AL162373.1-201ENST00000620433 407 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 Z69720.2-201ENST00000624755 279 ntBASIC3.09□□□□□ -1.91
CHMP4AQ9BY43 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.09□□□□□ -1.92
CHMP4AQ9BY43 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 SNORD56.1-201ENST00000362913 68 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 U3.4-201ENST00000363352 213 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 MIR518A2-201ENST00000384966 87 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 RNU6-550P-201ENST00000391057 101 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 PIGFP2-201ENST00000421400 651 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 AL356320.1-201ENST00000429616 163 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms