Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 OR11H5P-201ENST00000554039 926 ntBASIC1.9□□□□□ -2.11
SCN2AQ99250 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.9□□□□□ -2.11
SCN2AQ99250 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.9□□□□□ -2.11
SCN2AQ99250 AC004223.2-201ENST00000590309 544 ntBASIC1.9□□□□□ -2.11
SCN2AQ99250 AC007363.1-201ENST00000604736 620 ntBASIC1.9□□□□□ -2.11
SCN2AQ99250 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.11
SCN2AQ99250 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SCN2AQ99250 U6.42-201ENST00000618440 107 ntBASIC1.9□□□□□ -2.11
SCN2AQ99250 AC099842.1-201ENST00000619919 596 ntBASIC1.9□□□□□ -2.11
SCN2AQ99250 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SCN2AQ99250 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
SCN2AQ99250 RNU5E-7P-201ENST00000365290 117 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 RNA5SP240-201ENST00000365355 128 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN2AQ99250 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.89□□□□□ -2.11
SCN2AQ99250 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN2AQ99250 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN2AQ99250 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN2AQ99250 RNU6-717P-201ENST00000459076 104 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 RPL39P36-201ENST00000490784 156 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 CKS1BP2-201ENST00000497342 240 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 MTCO3P9-201ENST00000506989 781 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN2AQ99250 AC010493.1-201ENST00000513479 292 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 RPPH1-2P-201ENST00000516688 293 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 RNA5SP165-201ENST00000517142 115 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN2AQ99250 AP006587.4-201ENST00000526053 529 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN2AQ99250 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN2AQ99250 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.89□□□□□ -2.11
SCN2AQ99250 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN2AQ99250 AC105245.1-201ENST00000581934 244 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 MIR3611-201ENST00000584484 83 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 AC011494.1-201ENST00000596454 237 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 AC016727.1-205ENST00000605437 569 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 AC087045.1-201ENST00000605856 382 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 MIR98-201ENST00000606724 119 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN2AQ99250 AC091834.1-201ENST00000614543 472 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 AL158209.2-201ENST00000619266 216 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 AL589994.2-201ENST00000621124 579 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 AL359740.1-201ENST00000624340 592 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 MTND4P27-201ENST00000450813 1354 ntBASIC1.89□□□□□ -2.11
SCN2AQ99250 MTND5P30-201ENST00000452896 1731 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
SCN2AQ99250 RNY3P3-201ENST00000363816 102 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 Y_RNA.359-201ENST00000365498 102 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 RNU6-1042P-201ENST00000384204 107 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 RNU6-903P-201ENST00000391270 109 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AC068050.1-201ENST00000394891 380 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 C1DP2-201ENST00000418167 426 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 USP9YP18-201ENST00000425912 695 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 TIMM9P3-201ENST00000428659 274 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.88□□□□□ -2.11
SCN2AQ99250 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.88□□□□□ -2.11
SCN2AQ99250 AL445646.1-201ENST00000431784 216 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AC002486.1-201ENST00000435098 391 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.88□□□□□ -2.11
SCN2AQ99250 AC112771.1-201ENST00000463581 102 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.88□□□□□ -2.11
SCN2AQ99250 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.88□□□□□ -2.11
SCN2AQ99250 AC079140.3-201ENST00000511111 550 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SCN2AQ99250 AL391813.1-201ENST00000603098 260 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AL355598.1-201ENST00000604169 202 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 NDUFA8P1-201ENST00000605525 367 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AL451064.1-201ENST00000607718 471 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AC109347.2-201ENST00000610220 349 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 YWHAEP7-203ENST00000622054 312 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 U6.114-201ENST00000636407 96 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
SCN2AQ99250 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.88□□□□□ -2.11
SCN2AQ99250 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.88□□□□□ -2.11
SCN2AQ99250 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SCN2AQ99250 CDC27P3-201ENST00000635418 1910 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
SCN2AQ99250 Y_RNA.324-201ENST00000365165 102 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
SCN2AQ99250 RNA5SP213-201ENST00000391031 106 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 RNU6-248P-201ENST00000410720 107 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 RNU4-46P-201ENST00000410818 138 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 RNU6-1245P-201ENST00000411130 106 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 RPL21P90-201ENST00000415692 466 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 BTF3L4P3-201ENST00000418879 476 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AL596276.1-201ENST00000434465 418 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 RNU6-956P-201ENST00000458868 103 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AC108078.1-201ENST00000508073 725 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AC112206.3-201ENST00000514578 389 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 RNU5B-3P-201ENST00000516601 115 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.88□□□□□ -2.11
SCN2AQ99250 AP003392.2-201ENST00000527269 208 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.88□□□□□ -2.11
SCN2AQ99250 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.88□□□□□ -2.11
SCN2AQ99250 AC023824.2-201ENST00000566185 400 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.88□□□□□ -2.11
SCN2AQ99250 DPPA3P3-201ENST00000603842 430 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AC009314.1-201ENST00000603871 304 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 AC091304.9-201ENST00000612091 226 ntBASIC1.88□□□□□ -2.11
SCN2AQ99250 MIR6845-201ENST00000613182 61 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 166.8 ms