Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AC073349.3-201ENST00000617616 186 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 MIR3653-201ENST00000625572 110 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4□□□□□ -1.77
UBE3DQ7Z6J8 AC090740.1-201ENST00000623193 2262 ntBASIC4□□□□□ -1.77
UBE3DQ7Z6J8 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-626P-201ENST00000363354 107 ntBASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 MIR493-201ENST00000385254 89 ntBASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 RPL23AP48-201ENST00000406913 488 ntBASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 MIR1179-201ENST00000408703 91 ntBASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 AC099522.1-202ENST00000514718 367 ntBASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 TVP23BP1-201ENST00000557500 617 ntBASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 MIR4284-201ENST00000578924 81 ntBASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 MIR548AI-201ENST00000579940 88 ntBASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 AL109809.4-201ENST00000603520 2185 ntBASIC3.99□□□□□ -1.77
UBE3DQ7Z6J8 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 AC068254.2-201ENST00000623938 3577 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 SNORD56.1-201ENST00000362913 68 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 Y_RNA.233-201ENST00000364407 101 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-1175P-201ENST00000365200 107 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-20P-201ENST00000384106 107 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-1035P-201ENST00000384477 107 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 U3.19-201ENST00000390893 196 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-1001P-201ENST00000411265 100 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 WARS2P1-201ENST00000429678 537 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 POLR2KP2-201ENST00000438155 177 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 GPM6BP3-201ENST00000442797 145 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 AP001324.2-201ENST00000461163 319 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 RPL21P104-201ENST00000464143 478 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 AC005921.1-201ENST00000510589 286 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 AC006499.6-201ENST00000511169 607 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 RNA5SP468-201ENST00000516782 93 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 CYCSP29-201ENST00000533731 318 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 AL391261.3-201ENST00000557194 520 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 AC008749.1-201ENST00000597650 306 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 IGHVIII-44-202ENST00000636235 289 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 MIR3529-201ENST00000637713 78 ntBASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
UBE3DQ7Z6J8 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 Y_RNA.170-201ENST00000363746 110 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 RNA5SP189-201ENST00000364920 115 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-487P-201ENST00000365430 104 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 RNU6-47P-201ENST00000383866 107 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 SNORA37-201ENST00000384504 129 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 SNORA26.3-201ENST00000391119 136 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 AL606753.1-201ENST00000427435 87 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 COX6B1P7-201ENST00000430845 235 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 AC009220.1-201ENST00000451614 275 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 RN7SL481P-201ENST00000477764 299 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 PARP4P3-201ENST00000510265 317 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 HSPE1P4-201ENST00000550617 308 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 AC022655.2-201ENST00000577280 318 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 AC005176.2-201ENST00000596933 147 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 AL445567.2-201ENST00000618935 498 ntBASIC3.97□□□□□ -1.77
UBE3DQ7Z6J8 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 321 ms