Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 RPL9P6-201ENST00000492764 598 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC010486.2-201ENST00000505572 483 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC091965.2-201ENST00000512324 613 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 RNU6-410P-201ENST00000517006 107 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 SNORA48.11-201ENST00000517015 89 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 SNORA31.23-201ENST00000517219 133 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 IGKV3-31-201ENST00000523109 329 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 ANP32BP3-201ENST00000559213 706 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC145350.1-201ENST00000567426 208 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC012414.6-201ENST00000568241 401 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 MIR4529-201ENST00000578110 78 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC098848.2-201ENST00000588023 330 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC078899.2-201ENST00000595282 212 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC008749.1-201ENST00000597650 306 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC063944.3-201ENST00000609969 533 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 AC091931.1-201ENST00000623488 728 ntBASIC2.21□□□□□ -2.06
CCDC40Q4G0X9 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 OR4G2P-201ENST00000328113 903 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 MTND3P17-201ENST00000416968 344 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 RPL31P35-201ENST00000431058 377 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC096638.1-201ENST00000444678 216 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AL353705.4-201ENST00000449661 238 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 SNRPGP9-201ENST00000456025 225 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 SNORD42A-201ENST00000459584 64 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 ANXA2P1-201ENST00000505539 926 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC104806.1-201ENST00000508720 308 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 RNU2-53P-201ENST00000516257 147 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 SNORA43.2-201ENST00000516652 128 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 MIR514B-201ENST00000516774 80 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC109329.1-201ENST00000518744 317 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 BNIP3P6-201ENST00000549284 499 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC093249.1-201ENST00000567049 203 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC137800.2-201ENST00000574375 120 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 MIR5692A1-201ENST00000580523 69 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC073539.2-201ENST00000597113 165 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC098614.4-201ENST00000607601 462 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC022202.1-201ENST00000613515 211 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 uc_338.15-201ENST00000615470 191 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 AC008121.3-201ENST00000618726 433 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 MTND5P17-201ENST00000418405 1603 ntBASIC2.2□□□□□ -2.06
CCDC40Q4G0X9 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 FGF7P2-201ENST00000332473 296 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 RNU1-23P-201ENST00000363361 144 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 RNU6-529P-201ENST00000363383 104 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 RNY3P10-201ENST00000384764 102 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 MIR561-201ENST00000385216 97 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 RNA5SP425-201ENST00000410336 112 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 C1DP2-201ENST00000418167 426 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 GPR143P-201ENST00000434155 205 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 AC079781.2-201ENST00000446424 169 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 AC018868.1-201ENST00000491307 315 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 MTND3P25-201ENST00000509243 135 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 SNORA4.4-201ENST00000515921 135 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 AP003072.2-201ENST00000527756 676 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 OR5AL2P-201ENST00000532185 920 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 MIR98-201ENST00000606724 119 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 KPNA2P1-201ENST00000458289 1591 ntBASIC2.19□□□□□ -2.06
CCDC40Q4G0X9 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 SNORA25B-201ENST00000365507 128 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 RNU6-116P-201ENST00000384042 109 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 OR6C66P-201ENST00000414917 930 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AC074117.2-201ENST00000417130 397 ntBASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC40Q4G0X9 AL365400.1-201ENST00000431854 640 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms