Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AP001429.1-201ENST00000602568 530 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 BBIP1P1-201ENST00000602999 279 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 AP005229.2-201ENST00000609980 697 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 AC091925.2-201ENST00000625059 256 ntBASIC0.34□□□□□ -2.36
CHD9Q3L8U1 ANKRD26P2-201ENST00000445530 1710 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC100821.1-201ENST00000523153 2479 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 SNORD33-201ENST00000362761 85 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 SNORA50A-201ENST00000384225 134 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 RNU2-28P-201ENST00000410457 189 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 USP9YP19-201ENST00000412165 485 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 USP9YP13-201ENST00000417797 480 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 MTND2P24-201ENST00000453434 806 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 RPL21P47-201ENST00000483696 477 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 RNU7-40P-201ENST00000516397 64 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 RNA5SP290-201ENST00000517133 127 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 RNA5SP165-201ENST00000517142 115 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 DEFB108D-201ENST00000527787 222 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC007834.2-201ENST00000536310 343 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC073544.2-201ENST00000601155 540 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC096586.1-201ENST00000610267 561 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC004009.2-201ENST00000623016 728 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC087821.2-201ENST00000637086 450 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.33□□□□□ -2.36
CHD9Q3L8U1 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
CHD9Q3L8U1 Y_RNA.413-201ENST00000384007 102 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.33□□□□□ -2.36
CHD9Q3L8U1 PRPS1P1-201ENST00000445305 876 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 Y_RNA.754-201ENST00000476024 102 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AL163195.1-201ENST00000496941 348 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.33□□□□□ -2.36
CHD9Q3L8U1 RNU6-322P-201ENST00000516010 103 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 ARL2BPP5-201ENST00000523141 481 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC090115.3-201ENST00000553218 849 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC095057.3-201ENST00000567102 1157 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC0.33□□□□□ -2.36
CHD9Q3L8U1 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC024060.1-201ENST00000607052 494 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 Y_RNA.790-201ENST00000614282 102 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 Y_RNA.782-201ENST00000614695 102 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 AC009269.6-201ENST00000621778 588 ntBASIC0.33□□□□□ -2.36
CHD9Q3L8U1 HSBP1P2-201ENST00000299671 229 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 Y_RNA.185-201ENST00000363894 100 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 Y_RNA.552-201ENST00000384665 112 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AL606490.4-201ENST00000423117 127 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 UBE2V2P3-201ENST00000433562 437 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AL160314.1-201ENST00000490836 438 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC010460.2-201ENST00000509054 677 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 SMURF2P1-201ENST00000514992 481 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 RN7SKP256-201ENST00000517201 314 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC093519.1-201ENST00000566109 298 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC239868.4-201ENST00000608318 671 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 RNU6-486P-201ENST00000363116 107 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 RNU6-1339P-201ENST00000363574 91 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 RNU6-923P-201ENST00000364753 107 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 BTF3P8-201ENST00000414577 526 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC0.32□□□□□ -2.36
CHD9Q3L8U1 MTND2P5-201ENST00000432656 1006 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC092170.1-201ENST00000440211 356 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC134050.1-201ENST00000495088 933 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC110760.3-202ENST00000515177 371 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC090142.3-201ENST00000519012 385 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC091057.3-201ENST00000602684 733 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 NDUFA8P1-201ENST00000605525 367 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AL355802.4-201ENST00000607635 548 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AC005332.6-201ENST00000613178 446 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AL359314.1-201ENST00000616913 261 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 AL132822.1-201ENST00000617063 513 ntBASIC0.32□□□□□ -2.36
CHD9Q3L8U1 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.32□□□□□ -2.36
CHD9Q3L8U1 Y_RNA.245-201ENST00000364493 95 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC0.31□□□□□ -2.36
CHD9Q3L8U1 RNU6-968P-201ENST00000384076 107 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
CHD9Q3L8U1 UBE2V1P11-201ENST00000411559 285 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.31□□□□□ -2.36
CHD9Q3L8U1 USP9YP26-201ENST00000421008 661 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 USP9YP18-201ENST00000425912 695 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 MTCO3P5-201ENST00000433620 714 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 USP9YP24-201ENST00000434374 697 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 CR769776.1-201ENST00000441254 787 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 USP9YP17-201ENST00000444617 696 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC0.31□□□□□ -2.36
CHD9Q3L8U1 Y_RNA.659-201ENST00000515994 113 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 RNU6-902P-201ENST00000517212 91 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.31□□□□□ -2.36
CHD9Q3L8U1 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.31□□□□□ -2.36
CHD9Q3L8U1 uc_338.15-201ENST00000615470 191 ntBASIC0.31□□□□□ -2.36
CHD9Q3L8U1 AL109620.1-201ENST00000618738 1197 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms