Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 OR6C5P-201ENST00000452388 923 ntBASIC0.6□□□□□ -2.31
ABCA4P78363 RNU6-902P-201ENST00000517212 91 ntBASIC0.6□□□□□ -2.31
ABCA4P78363 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.6□□□□□ -2.31
ABCA4P78363 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.6□□□□□ -2.31
ABCA4P78363 AC133485.1-201ENST00000567176 124 ntBASIC0.6□□□□□ -2.31
ABCA4P78363 AC138907.6-201ENST00000568401 126 ntBASIC0.6□□□□□ -2.31
ABCA4P78363 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC0.6□□□□□ -2.31
ABCA4P78363 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
ABCA4P78363 AC073544.1-201ENST00000600110 1595 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 RNU1-39P-201ENST00000383897 165 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 Y_RNA.548-201ENST00000384656 105 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 RNU6-1300P-201ENST00000391046 108 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 SFR1P2-201ENST00000421841 730 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.59□□□□□ -2.31
ABCA4P78363 FCF1P6-201ENST00000456841 595 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 RNU7-59P-201ENST00000459101 61 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 AC114982.1-201ENST00000469402 321 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC0.59□□□□□ -2.31
ABCA4P78363 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.59□□□□□ -2.31
ABCA4P78363 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.59□□□□□ -2.31
ABCA4P78363 RNU6-714P-201ENST00000516963 103 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.59□□□□□ -2.31
ABCA4P78363 NIFKP6-201ENST00000598115 845 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 AC009237.15-201ENST00000610252 501 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.59□□□□□ -2.31
ABCA4P78363 AC243829.3-201ENST00000622177 108 ntBASIC0.59□□□□□ -2.31
ABCA4P78363 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.59□□□□□ -2.32
ABCA4P78363 MIR1262-201ENST00000408276 93 ntBASIC0.59□□□□□ -2.32
ABCA4P78363 RNU6-733P-201ENST00000410759 104 ntBASIC0.59□□□□□ -2.32
ABCA4P78363 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.59□□□□□ -2.32
ABCA4P78363 UBE2FP1-201ENST00000416536 447 ntBASIC0.59□□□□□ -2.32
ABCA4P78363 NCOR1P3-201ENST00000420479 303 ntBASIC0.59□□□□□ -2.32
ABCA4P78363 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC0.59□□□□□ -2.32
ABCA4P78363 RPL21P47-201ENST00000483696 477 ntBASIC0.59□□□□□ -2.32
ABCA4P78363 RNU6-927P-201ENST00000516199 100 ntBASIC0.59□□□□□ -2.32
ABCA4P78363 RNU7-40P-201ENST00000516397 64 ntBASIC0.59□□□□□ -2.32
ABCA4P78363 COPS8P3-201ENST00000526024 482 ntBASIC0.59□□□□□ -2.32
ABCA4P78363 LINC00557-201ENST00000563184 1279 ntBASIC0.59□□□□□ -2.32
ABCA4P78363 AC005261.5-201ENST00000596280 355 ntBASIC0.59□□□□□ -2.32
ABCA4P78363 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.58□□□□□ -2.32
ABCA4P78363 RNU6-271P-201ENST00000363858 105 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 SNORD56.4-201ENST00000363883 71 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 MIR329-2-201ENST00000385029 84 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.58□□□□□ -2.32
ABCA4P78363 AC019178.2-201ENST00000423595 505 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 RPS15AP9-201ENST00000439856 381 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.58□□□□□ -2.32
ABCA4P78363 BRK1P2-201ENST00000442875 223 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC0.58□□□□□ -2.32
ABCA4P78363 AC090502.2-201ENST00000549267 280 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC0.58□□□□□ -2.32
ABCA4P78363 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC0.58□□□□□ -2.32
ABCA4P78363 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.58□□□□□ -2.32
ABCA4P78363 AC008751.2-201ENST00000597885 980 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 AL583856.2-201ENST00000606298 543 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.58□□□□□ -2.32
ABCA4P78363 SNORD116-23-201ENST00000384645 92 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 MIR508-201ENST00000384857 115 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.58□□□□□ -2.32
ABCA4P78363 AC013410.2-201ENST00000422627 201 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 SKA2P1-201ENST00000425592 390 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 RPL7P43-201ENST00000478876 753 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 AC023194.1-201ENST00000493084 308 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.58□□□□□ -2.32
ABCA4P78363 AC118282.2-201ENST00000508739 374 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 MIR4666A-201ENST00000580160 79 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 AP002906.1-201ENST00000603405 233 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 Z82243.1-201ENST00000609432 473 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 MIR8065-201ENST00000620577 100 ntBASIC0.58□□□□□ -2.32
ABCA4P78363 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
ABCA4P78363 RNU6-222P-201ENST00000362438 107 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 RNU6-418P-201ENST00000384035 107 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 RNU6-160P-201ENST00000384591 107 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.57□□□□□ -2.32
ABCA4P78363 RNA5SP193-201ENST00000410353 107 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 RNU2-48P-201ENST00000410694 191 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 RNA5SP100-201ENST00000410903 110 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 RNA5SP59-201ENST00000410922 110 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.57□□□□□ -2.32
ABCA4P78363 AC092628.1-201ENST00000436250 252 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 GTF2IP13-201ENST00000438487 386 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 PTGES3P1-201ENST00000439531 483 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 RPL30P7-201ENST00000479312 323 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC0.57□□□□□ -2.32
ABCA4P78363 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 RNU6-586P-201ENST00000517265 104 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 AP003122.4-201ENST00000530980 758 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 LINC02555-201ENST00000563933 1951 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
ABCA4P78363 AC107075.1-201ENST00000613695 314 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 FAM157A-202ENST00000615155 405 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 uc_338.15-201ENST00000615470 191 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 OR4G2P-201ENST00000328113 903 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 SNORD1A-201ENST00000364968 72 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 SNORA2A-201ENST00000383885 135 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 RNU6-26P-201ENST00000383985 107 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 MIR518D-201ENST00000385014 87 ntBASIC0.57□□□□□ -2.32
ABCA4P78363 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms