Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
LIG3P49916 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LIG3P49916 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LIG3P49916 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LIG3P49916 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
LIG3P49916 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LIG3P49916 RNU6-858P-201ENST00000362436 107 ntBASIC4.21□□□□□ -1.74
LIG3P49916 SNORD115-32-201ENST00000364079 82 ntBASIC4.21□□□□□ -1.74
LIG3P49916 RNU6-17P-201ENST00000384245 107 ntBASIC4.21□□□□□ -1.74
LIG3P49916 Y_RNA.477-201ENST00000384352 108 ntBASIC4.21□□□□□ -1.74
LIG3P49916 RNU6-18P-201ENST00000384527 107 ntBASIC4.21□□□□□ -1.74
LIG3P49916 Y_RNA.515-201ENST00000384535 112 ntBASIC4.21□□□□□ -1.74
LIG3P49916 RNU2-25P-201ENST00000411041 191 ntBASIC4.21□□□□□ -1.74
LIG3P49916 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.21□□□□□ -1.74
LIG3P49916 AL031659.1-201ENST00000447075 539 ntBASIC4.21□□□□□ -1.74
LIG3P49916 RN7SKP21-201ENST00000516503 220 ntBASIC4.21□□□□□ -1.74
LIG3P49916 RNU6-928P-201ENST00000516876 104 ntBASIC4.21□□□□□ -1.74
LIG3P49916 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC4.21□□□□□ -1.74
LIG3P49916 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.21□□□□□ -1.74
LIG3P49916 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.21□□□□□ -1.74
LIG3P49916 AC007224.1-201ENST00000564410 144 ntBASIC4.21□□□□□ -1.74
LIG3P49916 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.21□□□□□ -1.74
LIG3P49916 AL451007.1-201ENST00000595491 289 ntBASIC4.21□□□□□ -1.74
LIG3P49916 Y_RNA.772-201ENST00000606692 102 ntBASIC4.21□□□□□ -1.74
LIG3P49916 AL391261.4-201ENST00000616012 481 ntBASIC4.21□□□□□ -1.74
LIG3P49916 MIR376A1-201ENST00000616574 68 ntBASIC4.21□□□□□ -1.74
LIG3P49916 AC007656.2-201ENST00000624902 4547 ntBASIC4.21□□□□□ -1.74
LIG3P49916 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
LIG3P49916 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LIG3P49916 AL353743.1-202ENST00000431724 1695 ntBASIC4.21□□□□□ -1.74
LIG3P49916 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.2□□□□□ -1.74
LIG3P49916 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
LIG3P49916 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LIG3P49916 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
LIG3P49916 RNU1-140P-201ENST00000365040 165 ntBASIC4.2□□□□□ -1.74
LIG3P49916 RNU6-1280P-201ENST00000365211 107 ntBASIC4.2□□□□□ -1.74
LIG3P49916 RNU6-142P-201ENST00000384019 107 ntBASIC4.2□□□□□ -1.74
LIG3P49916 SNORD78.2-201ENST00000391076 69 ntBASIC4.2□□□□□ -1.74
LIG3P49916 RNA5SP317-201ENST00000410176 116 ntBASIC4.2□□□□□ -1.74
LIG3P49916 RNA5SP311-201ENST00000411290 116 ntBASIC4.2□□□□□ -1.74
LIG3P49916 AC074117.2-201ENST00000417130 397 ntBASIC4.2□□□□□ -1.74
LIG3P49916 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.2□□□□□ -1.74
LIG3P49916 RPL23AP46-201ENST00000438548 490 ntBASIC4.2□□□□□ -1.74
LIG3P49916 MTND4LP30-201ENST00000454092 297 ntBASIC4.2□□□□□ -1.74
LIG3P49916 U8.22-201ENST00000459141 133 ntBASIC4.2□□□□□ -1.74
LIG3P49916 MRPL42P6-201ENST00000486397 371 ntBASIC4.2□□□□□ -1.74
LIG3P49916 MTND1P19-201ENST00000511780 315 ntBASIC4.2□□□□□ -1.74
LIG3P49916 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.2□□□□□ -1.74
LIG3P49916 RNU1-61P-201ENST00000516107 151 ntBASIC4.2□□□□□ -1.74
LIG3P49916 RNA5SP315-201ENST00000516340 116 ntBASIC4.2□□□□□ -1.74
LIG3P49916 RNA5SP312-201ENST00000517068 116 ntBASIC4.2□□□□□ -1.74
LIG3P49916 AC022868.1-201ENST00000517767 391 ntBASIC4.2□□□□□ -1.74
LIG3P49916 IGKV2-23-201ENST00000518729 323 ntBASIC4.2□□□□□ -1.74
LIG3P49916 AC016256.1-201ENST00000547971 354 ntBASIC4.2□□□□□ -1.74
LIG3P49916 AC073410.2-201ENST00000603240 332 ntBASIC4.2□□□□□ -1.74
LIG3P49916 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.2□□□□□ -1.74
LIG3P49916 ZYXP1-201ENST00000617638 118 ntBASIC4.2□□□□□ -1.74
LIG3P49916 AC073308.1-201ENST00000623696 305 ntBASIC4.2□□□□□ -1.74
LIG3P49916 AC244205.2-202ENST00000635781 342 ntBASIC4.2□□□□□ -1.74
LIG3P49916 Z82217.1-201ENST00000625157 8149 ntBASIC4.2□□□□□ -1.74
LIG3P49916 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LIG3P49916 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LIG3P49916 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.19□□□□□ -1.74
LIG3P49916 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
LIG3P49916 RNU6-222P-201ENST00000362438 107 ntBASIC4.19□□□□□ -1.74
LIG3P49916 Y_RNA.84-201ENST00000363011 104 ntBASIC4.19□□□□□ -1.74
LIG3P49916 RNA5SP515-201ENST00000364570 118 ntBASIC4.19□□□□□ -1.74
LIG3P49916 MIR153-2-201ENST00000385225 87 ntBASIC4.19□□□□□ -1.74
LIG3P49916 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
LIG3P49916 FTH1P15-201ENST00000406984 280 ntBASIC4.19□□□□□ -1.74
LIG3P49916 MIR1179-201ENST00000408703 91 ntBASIC4.19□□□□□ -1.74
LIG3P49916 MIR548H3-201ENST00000408771 118 ntBASIC4.19□□□□□ -1.74
LIG3P49916 RNU6-1203P-201ENST00000410703 110 ntBASIC4.19□□□□□ -1.74
LIG3P49916 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.19□□□□□ -1.74
LIG3P49916 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC4.19□□□□□ -1.74
LIG3P49916 OR4C10P-201ENST00000434991 931 ntBASIC4.19□□□□□ -1.74
LIG3P49916 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.19□□□□□ -1.74
LIG3P49916 RNA5SP310-201ENST00000459084 116 ntBASIC4.19□□□□□ -1.74
LIG3P49916 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC4.19□□□□□ -1.74
LIG3P49916 AC098869.1-201ENST00000481627 292 ntBASIC4.19□□□□□ -1.74
LIG3P49916 RPL30P1-201ENST00000488676 339 ntBASIC4.19□□□□□ -1.74
LIG3P49916 AC097462.2-201ENST00000504623 481 ntBASIC4.19□□□□□ -1.74
LIG3P49916 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.19□□□□□ -1.74
LIG3P49916 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.19□□□□□ -1.74
LIG3P49916 MIR7702-201ENST00000621931 59 ntBASIC4.19□□□□□ -1.74
LIG3P49916 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC4.19□□□□□ -1.74
LIG3P49916 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.19□□□□□ -1.74
LIG3P49916 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.19□□□□□ -1.74
LIG3P49916 AL773545.4-201ENST00000637262 310 ntBASIC4.19□□□□□ -1.74
LIG3P49916 AL513478.4-201ENST00000641636 310 ntBASIC4.19□□□□□ -1.74
LIG3P49916 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
LIG3P49916 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
LIG3P49916 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
LIG3P49916 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
LIG3P49916 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
LIG3P49916 LINC02555-201ENST00000563933 1951 ntBASIC4.18□□□□□ -1.74
LIG3P49916 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.18□□□□□ -1.74
LIG3P49916 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.18□□□□□ -1.74
LIG3P49916 RNU6-1301P-201ENST00000362724 104 ntBASIC4.18□□□□□ -1.74
LIG3P49916 SNORD32A-201ENST00000364805 84 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms