Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXA1P49639 AL442067.2-201ENST00000614033 363 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 AL162274.2-201ENST00000614406 332 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 AC010297.1-201ENST00000623948 149 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXA1P49639 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.61□□□□□ -1.99
HOXA1P49639 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.61□□□□□ -1.99
HOXA1P49639 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXA1P49639 GABRG2-229ENST00000641017 3628 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXA1P49639 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.6□□□□□ -1.99
HOXA1P49639 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
HOXA1P49639 RNA5SP479-201ENST00000364858 117 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 RNU6-128P-201ENST00000383976 107 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 MIR218-2-201ENST00000385006 110 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 MIR34A-201ENST00000385130 110 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 RNU2-49P-201ENST00000410666 184 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 AC023141.4-201ENST00000412031 328 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXA1P49639 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXA1P49639 AL139396.1-201ENST00000421137 167 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 BPY2DP-201ENST00000422208 265 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 TOMM20P4-201ENST00000427861 435 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 Z82205.1-201ENST00000428456 297 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 SNAP23P1-201ENST00000433229 246 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 FABP5P14-201ENST00000437273 393 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 AL714022.1-201ENST00000439897 151 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 BTF3P15-201ENST00000455606 336 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 Y_RNA.635-201ENST00000459041 101 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 AC106707.2-201ENST00000484182 374 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 RPL32P34-201ENST00000486380 400 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 AC018437.1-201ENST00000492214 406 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 IGKV3OR22-2-201ENST00000517943 313 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXA1P49639 IGKV2-26-201ENST00000518305 343 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
HOXA1P49639 LINC00933-203ENST00000559812 219 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXA1P49639 AL355598.1-201ENST00000604169 202 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 AC019159.1-201ENST00000605094 187 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 AC244517.12-201ENST00000623581 663 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXA1P49639 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXA1P49639 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXA1P49639 AC022336.2-201ENST00000568966 2538 ntBASIC2.6□□□□□ -1.99
HOXA1P49639 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.59□□□□□ -1.99
HOXA1P49639 AP003122.5-201ENST00000527668 3766 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HOXA1P49639 RNU6-78P-201ENST00000362897 107 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 Y_RNA.259-201ENST00000364619 101 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 SNORA62.3-201ENST00000365110 153 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HOXA1P49639 CD24P4-201ENST00000382840 243 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 Y_RNA.384-201ENST00000383909 102 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 Y_RNA.387-201ENST00000383918 102 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 RNU1-138P-201ENST00000384093 164 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 SNORA5A-201ENST00000384111 134 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 RNU6-601P-201ENST00000384540 107 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 RNA5SP229-201ENST00000410809 99 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.59□□□□□ -1.99
HOXA1P49639 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC2.59□□□□□ -1.99
HOXA1P49639 MTND4P28-201ENST00000426217 387 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 MTND1P14-201ENST00000427400 950 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 AC090525.1-201ENST00000479116 478 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 AC026801.1-201ENST00000497178 464 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.59□□□□□ -1.99
HOXA1P49639 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXA1P49639 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXA1P49639 TRAV32-201ENST00000553993 340 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXA1P49639 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXA1P49639 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXA1P49639 AL356055.1-201ENST00000602528 446 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 AL049779.4-201ENST00000604500 156 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 AL161423.1-201ENST00000613700 262 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 AC084781.2-201ENST00000615568 161 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 ATP5A1P2-202ENST00000616464 443 ntBASIC2.59□□□□□ -1.99
HOXA1P49639 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.59□□□□□ -2
HOXA1P49639 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.58□□□□□ -2
HOXA1P49639 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.58□□□□□ -2
HOXA1P49639 MAPK10-266ENST00000641066 6555 ntBASIC2.58□□□□□ -2
HOXA1P49639 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.58□□□□□ -2
HOXA1P49639 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.58□□□□□ -2
HOXA1P49639 RNA5SP393-201ENST00000363423 117 ntBASIC2.58□□□□□ -2
HOXA1P49639 SNORA25.6-201ENST00000364121 118 ntBASIC2.58□□□□□ -2
HOXA1P49639 RNU5E-7P-201ENST00000365290 117 ntBASIC2.58□□□□□ -2
HOXA1P49639 RNU6-1027P-201ENST00000383998 107 ntBASIC2.58□□□□□ -2
HOXA1P49639 U3.37-201ENST00000408528 213 ntBASIC2.58□□□□□ -2
HOXA1P49639 AL117339.3-201ENST00000418733 162 ntBASIC2.58□□□□□ -2
HOXA1P49639 AC097713.2-201ENST00000430199 356 ntBASIC2.58□□□□□ -2
HOXA1P49639 USP9YP30-201ENST00000430729 455 ntBASIC2.58□□□□□ -2
HOXA1P49639 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.58□□□□□ -2
HOXA1P49639 RPL21P23-201ENST00000446654 460 ntBASIC2.58□□□□□ -2
HOXA1P49639 SNORD19B-201ENST00000459623 84 ntBASIC2.58□□□□□ -2
HOXA1P49639 RPL7P42-201ENST00000481005 679 ntBASIC2.58□□□□□ -2
HOXA1P49639 AC103975.1-201ENST00000482506 483 ntBASIC2.58□□□□□ -2
HOXA1P49639 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.58□□□□□ -2
HOXA1P49639 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.58□□□□□ -2
HOXA1P49639 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.58□□□□□ -2
HOXA1P49639 AL121821.2-201ENST00000556081 394 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms