Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.56□□□□□ -2
LHX1P48742 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.56□□□□□ -2
LHX1P48742 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
LHX1P48742 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.56□□□□□ -2
LHX1P48742 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.56□□□□□ -2
LHX1P48742 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.56□□□□□ -2
LHX1P48742 RNU6-1303P-201ENST00000364841 107 ntBASIC2.56□□□□□ -2
LHX1P48742 XGY1-201ENST00000381172 446 ntBASIC2.56□□□□□ -2
LHX1P48742 MIR627-201ENST00000384979 97 ntBASIC2.56□□□□□ -2
LHX1P48742 CIR1P3-201ENST00000405137 479 ntBASIC2.56□□□□□ -2
LHX1P48742 SNORA11.2-201ENST00000408318 127 ntBASIC2.56□□□□□ -2
LHX1P48742 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.56□□□□□ -2
LHX1P48742 CYCSP33-201ENST00000414485 327 ntBASIC2.56□□□□□ -2
LHX1P48742 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.56□□□□□ -2
LHX1P48742 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.56□□□□□ -2
LHX1P48742 AC004383.1-201ENST00000438135 289 ntBASIC2.56□□□□□ -2
LHX1P48742 CALM1P1-201ENST00000442082 433 ntBASIC2.56□□□□□ -2
LHX1P48742 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.56□□□□□ -2
LHX1P48742 AP001324.2-201ENST00000461163 319 ntBASIC2.56□□□□□ -2
LHX1P48742 AL121769.1-201ENST00000469473 401 ntBASIC2.56□□□□□ -2
LHX1P48742 AIG1P1-201ENST00000503376 148 ntBASIC2.56□□□□□ -2
LHX1P48742 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.56□□□□□ -2
LHX1P48742 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.56□□□□□ -2
LHX1P48742 AC026436.1-201ENST00000510537 270 ntBASIC2.56□□□□□ -2
LHX1P48742 RNU2-69P-201ENST00000516061 100 ntBASIC2.56□□□□□ -2
LHX1P48742 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.56□□□□□ -2
LHX1P48742 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.56□□□□□ -2
LHX1P48742 MTND4P7-201ENST00000523876 130 ntBASIC2.56□□□□□ -2
LHX1P48742 AC016957.1-201ENST00000534895 309 ntBASIC2.56□□□□□ -2
LHX1P48742 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.56□□□□□ -2
LHX1P48742 HMGB1P33-201ENST00000563485 527 ntBASIC2.56□□□□□ -2
LHX1P48742 AP000787.2-201ENST00000604432 568 ntBASIC2.56□□□□□ -2
LHX1P48742 uc_338.14-201ENST00000613162 166 ntBASIC2.56□□□□□ -2
LHX1P48742 AL590808.1-201ENST00000618696 141 ntBASIC2.56□□□□□ -2
LHX1P48742 AC026585.1-201ENST00000619582 524 ntBASIC2.56□□□□□ -2
LHX1P48742 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.56□□□□□ -2
LHX1P48742 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.56□□□□□ -2
LHX1P48742 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.56□□□□□ -2
LHX1P48742 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.56□□□□□ -2
LHX1P48742 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.56□□□□□ -2
LHX1P48742 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.55□□□□□ -2
LHX1P48742 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.55□□□□□ -2
LHX1P48742 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
LHX1P48742 RNU6-1180P-201ENST00000364935 107 ntBASIC2.55□□□□□ -2
LHX1P48742 SET-203ENST00000372688 801 ntTSL 2 BASIC2.55□□□□□ -2
LHX1P48742 RNU6-1215P-201ENST00000384441 102 ntBASIC2.55□□□□□ -2
LHX1P48742 RNU6-780P-201ENST00000391030 104 ntBASIC2.55□□□□□ -2
LHX1P48742 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.55□□□□□ -2
LHX1P48742 FO393413.1-201ENST00000402892 195 ntBASIC2.55□□□□□ -2
LHX1P48742 AL590002.1-201ENST00000406554 418 ntBASIC2.55□□□□□ -2
LHX1P48742 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.55□□□□□ -2
LHX1P48742 MTND1P34-201ENST00000438556 671 ntBASIC2.55□□□□□ -2
LHX1P48742 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.55□□□□□ -2
LHX1P48742 AC008571.1-201ENST00000467232 300 ntBASIC2.55□□□□□ -2
LHX1P48742 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.55□□□□□ -2
LHX1P48742 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.55□□□□□ -2
LHX1P48742 RNA5SP401-201ENST00000515920 127 ntBASIC2.55□□□□□ -2
LHX1P48742 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.55□□□□□ -2
LHX1P48742 BTF3P12-201ENST00000519620 469 ntBASIC2.55□□□□□ -2
LHX1P48742 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.55□□□□□ -2
LHX1P48742 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.55□□□□□ -2
LHX1P48742 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.55□□□□□ -2
LHX1P48742 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.55□□□□□ -2
LHX1P48742 AC009163.5-201ENST00000575421 637 ntBASIC2.55□□□□□ -2
LHX1P48742 AC025165.5-201ENST00000602802 578 ntBASIC2.55□□□□□ -2
LHX1P48742 AL670379.10-201ENST00000604330 253 ntBASIC2.55□□□□□ -2
LHX1P48742 AL670379.9-201ENST00000605428 253 ntBASIC2.55□□□□□ -2
LHX1P48742 AP003400.5-201ENST00000624827 617 ntBASIC2.55□□□□□ -2
LHX1P48742 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.54□□□□□ -2
LHX1P48742 AC010329.5-201ENST00000623497 2174 ntBASIC2.54□□□□□ -2
LHX1P48742 AC069528.2-201ENST00000624849 1991 ntBASIC2.54□□□□□ -2
LHX1P48742 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.54□□□□□ -2
LHX1P48742 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.54□□□□□ -2
LHX1P48742 MTND5P30-201ENST00000452896 1731 ntBASIC2.54□□□□□ -2
LHX1P48742 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
LHX1P48742 RNA5SP289-201ENST00000362332 137 ntBASIC2.54□□□□□ -2
LHX1P48742 RNU6-461P-201ENST00000364195 107 ntBASIC2.54□□□□□ -2
LHX1P48742 SNORD56.5-201ENST00000364281 72 ntBASIC2.54□□□□□ -2
LHX1P48742 SNORD114-30-201ENST00000364448 72 ntBASIC2.54□□□□□ -2
LHX1P48742 RNA5SP126-201ENST00000365092 109 ntBASIC2.54□□□□□ -2
LHX1P48742 Y_RNA.324-201ENST00000365165 102 ntBASIC2.54□□□□□ -2
LHX1P48742 Y_RNA.480-201ENST00000384364 102 ntBASIC2.54□□□□□ -2
LHX1P48742 MIR181A1-201ENST00000385026 110 ntBASIC2.54□□□□□ -2
LHX1P48742 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.54□□□□□ -2
LHX1P48742 BTF3P7-201ENST00000407097 488 ntBASIC2.54□□□□□ -2
LHX1P48742 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.54□□□□□ -2
LHX1P48742 RNU6-1328P-201ENST00000410938 106 ntBASIC2.54□□□□□ -2
LHX1P48742 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.54□□□□□ -2
LHX1P48742 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.54□□□□□ -2
LHX1P48742 FABP5P14-201ENST00000437273 393 ntBASIC2.54□□□□□ -2
LHX1P48742 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.54□□□□□ -2
LHX1P48742 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.54□□□□□ -2
LHX1P48742 AC012308.1-201ENST00000451232 178 ntBASIC2.54□□□□□ -2
LHX1P48742 AC006026.2-201ENST00000457376 180 ntBASIC2.54□□□□□ -2
LHX1P48742 MED28P2-201ENST00000475771 317 ntBASIC2.54□□□□□ -2
LHX1P48742 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.54□□□□□ -2
LHX1P48742 Y_RNA.704-201ENST00000516851 102 ntBASIC2.54□□□□□ -2
LHX1P48742 RNU6-835P-201ENST00000516974 104 ntBASIC2.54□□□□□ -2
LHX1P48742 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.54□□□□□ -2
LHX1P48742 SNORD53-201ENST00000579969 78 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms