Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
CLDN3O15551 AC233702.2-202ENST00000562547 291 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.09□□□□□ -2.07
CLDN3O15551 AC026271.5-201ENST00000577873 130 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 AC008521.1-201ENST00000587471 187 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 BNIP3P8-201ENST00000597863 560 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 WISP1-OT1-201ENST00000602893 642 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 AL353778.1-201ENST00000603149 408 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 ELOCP5-201ENST00000604924 333 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 AC092354.1-201ENST00000606057 376 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 AC098614.4-201ENST00000607601 462 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.09□□□□□ -2.07
CLDN3O15551 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.09□□□□□ -2.07
CLDN3O15551 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.09□□□□□ -2.08
CLDN3O15551 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
CLDN3O15551 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CLDN3O15551 RNU6-212P-201ENST00000362642 104 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 RNY4P34-201ENST00000364779 95 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 U3.13-201ENST00000364804 214 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 RNU6-487P-201ENST00000365430 104 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 HMGN2P39-201ENST00000398005 273 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 RNU2-20P-201ENST00000410425 191 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 RPL21P90-201ENST00000415692 466 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 AL445685.2-201ENST00000422551 342 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.08□□□□□ -2.08
CLDN3O15551 HMGB1P31-201ENST00000437242 427 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.08□□□□□ -2.08
CLDN3O15551 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.08□□□□□ -2.08
CLDN3O15551 IMMP1LP2-201ENST00000552954 492 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 MIR5692A1-201ENST00000580523 69 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 AC012065.4-201ENST00000602445 679 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 AL121992.2-201ENST00000606262 256 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 AC012360.2-201ENST00000609349 391 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.08□□□□□ -2.08
CLDN3O15551 AC091932.3-201ENST00000624223 323 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 AL359740.1-201ENST00000624340 592 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 MTND4P4-201ENST00000439033 1366 ntBASIC2.08□□□□□ -2.08
CLDN3O15551 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.07□□□□□ -2.08
CLDN3O15551 RNU6-655P-201ENST00000362858 107 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 RNU6-384P-201ENST00000364900 104 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 U8.13-201ENST00000390842 128 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 SNORA46.1-201ENST00000391069 153 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 AL031779.1-201ENST00000415663 330 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.07□□□□□ -2.08
CLDN3O15551 RPL21P99-201ENST00000480369 423 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 AC018868.1-201ENST00000491307 315 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 HMGB1P35-201ENST00000503360 598 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 SCARNA24.1-201ENST00000516465 137 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 RNU6-759P-201ENST00000516740 103 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 RNU2-46P-201ENST00000517038 113 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.07□□□□□ -2.08
CLDN3O15551 AC106038.2-201ENST00000520706 568 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 AC110588.1-201ENST00000559699 137 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 AC091304.9-201ENST00000612091 226 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 AC026585.1-201ENST00000619582 524 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 AL162373.1-201ENST00000620433 407 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 AC079248.2-201ENST00000623779 326 ntBASIC2.07□□□□□ -2.08
CLDN3O15551 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.06□□□□□ -2.08
CLDN3O15551 AL359851.1-201ENST00000569460 4997 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 AL356292.1-201ENST00000283110 373 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CLDN3O15551 RNA5SP276-201ENST00000362580 94 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 RNU6-1159P-201ENST00000362933 107 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CLDN3O15551 RNU4-52P-201ENST00000384209 138 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 RNU6-622P-201ENST00000384272 103 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 MIR583-201ENST00000384846 75 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
CLDN3O15551 AL031577.2-201ENST00000404133 280 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 EEF1A1P40-201ENST00000412883 573 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.06□□□□□ -2.08
CLDN3O15551 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC2.06□□□□□ -2.08
CLDN3O15551 MTND6P13-201ENST00000443510 523 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 AL360271.2-201ENST00000447710 161 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 PMCHL2-203ENST00000457791 237 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 RAP1BP2-201ENST00000478270 544 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.06□□□□□ -2.08
CLDN3O15551 AC116562.3-201ENST00000506136 177 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.06□□□□□ -2.08
CLDN3O15551 SNORA43.2-201ENST00000516652 128 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 Vault.3-201ENST00000516676 95 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 RNU6-667P-201ENST00000517186 102 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 SNORA31.23-201ENST00000517219 133 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 AC068587.5-201ENST00000528506 175 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.06□□□□□ -2.08
CLDN3O15551 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
CLDN3O15551 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.06□□□□□ -2.08
CLDN3O15551 MIR3935-201ENST00000583472 104 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 AC122133.1-201ENST00000613964 233 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 AC008250.2-201ENST00000615261 205 ntBASIC2.06□□□□□ -2.08
CLDN3O15551 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CLDN3O15551 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
CLDN3O15551 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CLDN3O15551 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
CLDN3O15551 SNORD56.1-201ENST00000362913 68 ntBASIC2.05□□□□□ -2.08
CLDN3O15551 SNORD115-3-201ENST00000363100 82 ntBASIC2.05□□□□□ -2.08
CLDN3O15551 RNU6-529P-201ENST00000363383 104 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms