Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 UBE2V1P10-201ENST00000414685 269 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 BTF3P4-201ENST00000418852 495 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC0.96□□□□□ -2.26
SDCBPO00560 MTCO3P5-201ENST00000433620 714 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 AL591212.2-201ENST00000433923 257 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 AL353752.1-201ENST00000454946 260 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 AL583843.1-201ENST00000456070 346 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 snoU109.2-201ENST00000459316 135 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 AC109445.1-201ENST00000512356 383 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.96□□□□□ -2.26
SDCBPO00560 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.96□□□□□ -2.26
SDCBPO00560 AC022616.8-201ENST00000533569 253 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 AC084364.2-201ENST00000546924 395 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 AC092325.1-201ENST00000566449 554 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 MIR544B-201ENST00000582372 78 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 MIR4298-201ENST00000584380 73 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 AC078795.2-201ENST00000602835 1252 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 AC108747.1-201ENST00000609508 535 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.96□□□□□ -2.26
SDCBPO00560 ZNF680P1-201ENST00000436625 1469 ntBASIC0.96□□□□□ -2.26
SDCBPO00560 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
SDCBPO00560 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
SDCBPO00560 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.95□□□□□ -2.26
SDCBPO00560 RNU6-433P-201ENST00000363216 104 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 RNU6-743P-201ENST00000364151 106 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
SDCBPO00560 MIR301A-201ENST00000385261 86 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 SNORA48.1-201ENST00000390879 135 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 RNU6-278P-201ENST00000390945 109 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 AP1B1P2-201ENST00000416196 106 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 RPS29P28-201ENST00000446439 141 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.95□□□□□ -2.26
SDCBPO00560 AL139824.2-201ENST00000458731 1095 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 SNORD97-201ENST00000459187 142 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 AC010409.1-201ENST00000487382 476 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 AC099513.1-201ENST00000490423 301 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 AC116353.3-201ENST00000511215 249 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 AC109329.1-201ENST00000518744 317 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.95□□□□□ -2.26
SDCBPO00560 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC0.95□□□□□ -2.26
SDCBPO00560 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC0.95□□□□□ -2.26
SDCBPO00560 AC136618.2-201ENST00000575091 400 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC0.95□□□□□ -2.26
SDCBPO00560 WISP1-OT1-201ENST00000602893 642 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 AL022345.1-201ENST00000607292 135 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 AL355816.2-201ENST00000610049 647 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 MIR6078-201ENST00000611069 100 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 AL365204.3-201ENST00000612448 685 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 AC092656.1-203ENST00000624134 423 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 MIR1248-201ENST00000629190 106 ntBASIC0.95□□□□□ -2.26
SDCBPO00560 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.95□□□□□ -2.26
SDCBPO00560 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
SDCBPO00560 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC0.94□□□□□ -2.26
SDCBPO00560 Y_RNA.67-201ENST00000362870 100 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
SDCBPO00560 MIR513A1-201ENST00000385138 129 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
SDCBPO00560 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
SDCBPO00560 SRIP3-201ENST00000413200 219 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC0.94□□□□□ -2.26
SDCBPO00560 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.94□□□□□ -2.26
SDCBPO00560 AL354941.1-201ENST00000438600 464 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.94□□□□□ -2.26
SDCBPO00560 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.94□□□□□ -2.26
SDCBPO00560 AC007327.1-201ENST00000447461 264 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 AC245102.2-201ENST00000448956 180 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 AC108059.3-201ENST00000456388 214 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC0.94□□□□□ -2.26
SDCBPO00560 AC093852.1-201ENST00000503587 266 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC0.94□□□□□ -2.26
SDCBPO00560 SNORA31.17-201ENST00000516953 127 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 AP003168.1-201ENST00000530091 307 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 AP003034.1-201ENST00000534621 422 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
SDCBPO00560 MIR1273C-201ENST00000578669 77 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC0.94□□□□□ -2.26
SDCBPO00560 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.94□□□□□ -2.26
SDCBPO00560 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC0.94□□□□□ -2.26
SDCBPO00560 VN1R82P-201ENST00000601481 356 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 AC012065.4-201ENST00000602445 679 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 AP000860.1-201ENST00000605250 559 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 MIR15A-201ENST00000607334 83 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 RNU6-1192P-201ENST00000612197 107 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC0.94□□□□□ -2.26
SDCBPO00560 RNU6-489P-201ENST00000618289 107 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 AP003476.1-201ENST00000623984 516 ntBASIC0.94□□□□□ -2.26
SDCBPO00560 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
SDCBPO00560 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
SDCBPO00560 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.93□□□□□ -2.26
SDCBPO00560 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.93□□□□□ -2.26
SDCBPO00560 AL391987.6-201ENST00000305671 199 ntBASIC0.93□□□□□ -2.26
SDCBPO00560 Y_RNA.33-201ENST00000362591 102 ntBASIC0.93□□□□□ -2.26
SDCBPO00560 RNU6-655P-201ENST00000362858 107 ntBASIC0.93□□□□□ -2.26
SDCBPO00560 SNORD14B-201ENST00000364533 90 ntBASIC0.93□□□□□ -2.26
SDCBPO00560 RNU1-78P-201ENST00000391248 165 ntBASIC0.93□□□□□ -2.26
SDCBPO00560 PIGPP2-201ENST00000411569 458 ntBASIC0.93□□□□□ -2.26
SDCBPO00560 AC004965.1-201ENST00000413033 213 ntBASIC0.93□□□□□ -2.26
SDCBPO00560 AC019070.1-201ENST00000415008 1024 ntBASIC0.93□□□□□ -2.26
SDCBPO00560 AL365338.1-201ENST00000422282 858 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 141.1 ms