Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CBX4O00257 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
CBX4O00257 U3.6-201ENST00000363622 211 ntBASIC3.7□□□□□ -1.82
CBX4O00257 Y_RNA.533-201ENST00000384596 114 ntBASIC3.7□□□□□ -1.82
CBX4O00257 AP000275.1-201ENST00000411943 390 ntBASIC3.7□□□□□ -1.82
CBX4O00257 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.7□□□□□ -1.82
CBX4O00257 AC007458.1-201ENST00000542812 373 ntBASIC3.7□□□□□ -1.82
CBX4O00257 AC006199.1-201ENST00000548728 219 ntBASIC3.7□□□□□ -1.82
CBX4O00257 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.7□□□□□ -1.82
CBX4O00257 AC011471.1-201ENST00000585766 187 ntBASIC3.7□□□□□ -1.82
CBX4O00257 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.7□□□□□ -1.82
CBX4O00257 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CBX4O00257 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CBX4O00257 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CBX4O00257 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
CBX4O00257 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CBX4O00257 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CBX4O00257 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.7□□□□□ -1.82
CBX4O00257 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
CBX4O00257 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.69□□□□□ -1.82
CBX4O00257 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.69□□□□□ -1.82
CBX4O00257 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.69□□□□□ -1.82
CBX4O00257 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
CBX4O00257 Y_RNA.39-201ENST00000362620 98 ntBASIC3.69□□□□□ -1.82
CBX4O00257 SNORD56.1-201ENST00000362913 68 ntBASIC3.69□□□□□ -1.82
CBX4O00257 Y_RNA.158-201ENST00000363651 101 ntBASIC3.69□□□□□ -1.82
CBX4O00257 RNU6-99P-201ENST00000364721 107 ntBASIC3.69□□□□□ -1.82
CBX4O00257 Y_RNA.314-201ENST00000365114 102 ntBASIC3.69□□□□□ -1.82
CBX4O00257 Y_RNA.496-201ENST00000384444 101 ntBASIC3.69□□□□□ -1.82
CBX4O00257 HMGN2P8-201ENST00000391458 268 ntBASIC3.69□□□□□ -1.82
CBX4O00257 MRPL42P3-201ENST00000401492 326 ntBASIC3.69□□□□□ -1.82
CBX4O00257 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.69□□□□□ -1.82
CBX4O00257 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.69□□□□□ -1.82
CBX4O00257 AL714022.1-201ENST00000439897 151 ntBASIC3.69□□□□□ -1.82
CBX4O00257 GSTA11P-201ENST00000452866 669 ntBASIC3.69□□□□□ -1.82
CBX4O00257 SNORD105B-201ENST00000458770 79 ntBASIC3.69□□□□□ -1.82
CBX4O00257 RNU7-23P-201ENST00000459465 62 ntBASIC3.69□□□□□ -1.82
CBX4O00257 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.69□□□□□ -1.82
CBX4O00257 AC010653.1-201ENST00000571108 881 ntBASIC3.69□□□□□ -1.82
CBX4O00257 MIR5195-201ENST00000583555 115 ntBASIC3.69□□□□□ -1.82
CBX4O00257 AC008737.2-201ENST00000599446 118 ntBASIC3.69□□□□□ -1.82
CBX4O00257 AL158827.2-201ENST00000602494 330 ntBASIC3.69□□□□□ -1.82
CBX4O00257 AC092447.9-201ENST00000603395 144 ntBASIC3.69□□□□□ -1.82
CBX4O00257 AP001836.1-201ENST00000604675 523 ntBASIC3.69□□□□□ -1.82
CBX4O00257 AC019159.1-201ENST00000605094 187 ntBASIC3.69□□□□□ -1.82
CBX4O00257 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.69□□□□□ -1.82
CBX4O00257 AC091925.1-201ENST00000623204 462 ntBASIC3.69□□□□□ -1.82
CBX4O00257 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.69□□□□□ -1.82
CBX4O00257 AL691447.3-201ENST00000635020 330 ntBASIC3.69□□□□□ -1.82
CBX4O00257 AC241585.2-209ENST00000638217 143 ntBASIC3.69□□□□□ -1.82
CBX4O00257 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CBX4O00257 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CBX4O00257 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
CBX4O00257 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
CBX4O00257 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CBX4O00257 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CBX4O00257 AC004944.1-201ENST00000517807 3059 ntBASIC3.68□□□□□ -1.82
CBX4O00257 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CBX4O00257 Y_RNA.123-201ENST00000363338 102 ntBASIC3.68□□□□□ -1.82
CBX4O00257 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.68□□□□□ -1.82
CBX4O00257 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CBX4O00257 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CBX4O00257 RNU6-1077P-201ENST00000410506 102 ntBASIC3.68□□□□□ -1.82
CBX4O00257 Z92545.1-201ENST00000411782 234 ntBASIC3.68□□□□□ -1.82
CBX4O00257 RHEBP3-201ENST00000411920 351 ntBASIC3.68□□□□□ -1.82
CBX4O00257 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.68□□□□□ -1.82
CBX4O00257 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.68□□□□□ -1.82
CBX4O00257 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.68□□□□□ -1.82
CBX4O00257 AL160004.2-201ENST00000432935 350 ntBASIC3.68□□□□□ -1.82
CBX4O00257 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.68□□□□□ -1.82
CBX4O00257 RPS15AP5-201ENST00000436276 388 ntBASIC3.68□□□□□ -1.82
CBX4O00257 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CBX4O00257 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.68□□□□□ -1.82
CBX4O00257 RPS29P27-201ENST00000463711 170 ntBASIC3.68□□□□□ -1.82
CBX4O00257 MED28P2-201ENST00000475771 317 ntBASIC3.68□□□□□ -1.82
CBX4O00257 AC015911.1-201ENST00000495111 156 ntBASIC3.68□□□□□ -1.82
CBX4O00257 SNORA31.1-201ENST00000515993 133 ntBASIC3.68□□□□□ -1.82
CBX4O00257 SNORA31.5-201ENST00000516190 133 ntBASIC3.68□□□□□ -1.82
CBX4O00257 RN7SKP83-201ENST00000516512 178 ntBASIC3.68□□□□□ -1.82
CBX4O00257 RNU7-4P-201ENST00000516961 62 ntBASIC3.68□□□□□ -1.82
CBX4O00257 GNAI2P1-201ENST00000541815 315 ntBASIC3.68□□□□□ -1.82
CBX4O00257 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.68□□□□□ -1.82
CBX4O00257 AC009163.5-201ENST00000575421 637 ntBASIC3.68□□□□□ -1.82
CBX4O00257 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.68□□□□□ -1.82
CBX4O00257 MIR5696-201ENST00000578474 85 ntBASIC3.68□□□□□ -1.82
CBX4O00257 7SK.7-201ENST00000603504 247 ntBASIC3.68□□□□□ -1.82
CBX4O00257 AC006077.1-201ENST00000604746 343 ntBASIC3.68□□□□□ -1.82
CBX4O00257 AC009318.2-201ENST00000610917 651 ntBASIC3.68□□□□□ -1.82
CBX4O00257 MIR3529-201ENST00000637713 78 ntBASIC3.68□□□□□ -1.82
CBX4O00257 AC009541.1-201ENST00000438279 2662 ntBASIC3.68□□□□□ -1.82
CBX4O00257 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CBX4O00257 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
CBX4O00257 AC007496.3-201ENST00000624987 3443 ntBASIC3.68□□□□□ -1.82
CBX4O00257 AP001148.1-201ENST00000624124 2359 ntBASIC3.68□□□□□ -1.82
CBX4O00257 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
CBX4O00257 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CBX4O00257 RNU6-595P-201ENST00000363944 107 ntBASIC3.67□□□□□ -1.82
CBX4O00257 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.67□□□□□ -1.82
CBX4O00257 Y_RNA.459-201ENST00000384251 102 ntBASIC3.67□□□□□ -1.82
CBX4O00257 RNU6-784P-201ENST00000384330 106 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms