Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.05■□□□□ 0.48
LIM2P55344 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.04■□□□□ 0.48
LIM2P55344 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LIM2P55344 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
LIM2P55344 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.04■□□□□ 0.48
LIM2P55344 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.04■□□□□ 0.48
LIM2P55344 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
LIM2P55344 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.04■□□□□ 0.48
LIM2P55344 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.04■□□□□ 0.48
LIM2P55344 PRSS44-201ENST00000515154 1146 ntBASIC18.04■□□□□ 0.48
LIM2P55344 AL355075.4-201ENST00000554988 638 ntBASIC18.04■□□□□ 0.48
LIM2P55344 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.04■□□□□ 0.48
LIM2P55344 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.04■□□□□ 0.48
LIM2P55344 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.04■□□□□ 0.48
LIM2P55344 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.04■□□□□ 0.48
LIM2P55344 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LIM2P55344 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIM2P55344 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 AL161938.1-201ENST00000569833 2180 ntBASIC18.03■□□□□ 0.48
LIM2P55344 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.03■□□□□ 0.48
LIM2P55344 FP475955.4-201ENST00000623131 1990 ntBASIC18.03■□□□□ 0.48
LIM2P55344 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.03■□□□□ 0.48
LIM2P55344 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
LIM2P55344 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
LIM2P55344 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.03■□□□□ 0.48
LIM2P55344 RBM17P1-201ENST00000453646 1190 ntBASIC18.03■□□□□ 0.48
LIM2P55344 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
LIM2P55344 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.03■□□□□ 0.48
LIM2P55344 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.03■□□□□ 0.48
LIM2P55344 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.03■□□□□ 0.48
LIM2P55344 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.03■□□□□ 0.48
LIM2P55344 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
LIM2P55344 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.03■□□□□ 0.48
LIM2P55344 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.03■□□□□ 0.48
LIM2P55344 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
LIM2P55344 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 FEM1AP3-201ENST00000403722 1741 ntBASIC18.03■□□□□ 0.48
LIM2P55344 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
LIM2P55344 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIM2P55344 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
LIM2P55344 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.02■□□□□ 0.48
LIM2P55344 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIM2P55344 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIM2P55344 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIM2P55344 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LIM2P55344 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.02■□□□□ 0.48
LIM2P55344 UNC93B2-201ENST00000285383 730 ntBASIC18.02■□□□□ 0.48
LIM2P55344 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
LIM2P55344 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.48
LIM2P55344 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LIM2P55344 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIM2P55344 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.02■□□□□ 0.48
LIM2P55344 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.02■□□□□ 0.48
LIM2P55344 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIM2P55344 AC097488.1-201ENST00000507834 756 ntBASIC18.02■□□□□ 0.48
LIM2P55344 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.02■□□□□ 0.48
LIM2P55344 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LIM2P55344 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.02■□□□□ 0.48
LIM2P55344 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LIM2P55344 CKBP1-201ENST00000565489 1086 ntBASIC18.02■□□□□ 0.48
LIM2P55344 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.02■□□□□ 0.48
LIM2P55344 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.02■□□□□ 0.48
LIM2P55344 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.02■□□□□ 0.48
LIM2P55344 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
LIM2P55344 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.02■□□□□ 0.47
LIM2P55344 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.02■□□□□ 0.47
LIM2P55344 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
LIM2P55344 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
LIM2P55344 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.02■□□□□ 0.47
LIM2P55344 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.02■□□□□ 0.47
LIM2P55344 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
LIM2P55344 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LIM2P55344 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
LIM2P55344 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LIM2P55344 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIM2P55344 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LIM2P55344 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms