Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 BX664615.1-201ENST00000443558 458 ntBASIC20.03■□□□□ 0.8
BDNFP23560 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
BDNFP23560 MIR4674-201ENST00000582457 87 ntBASIC20.03■□□□□ 0.8
BDNFP23560 AC141586.3-201ENST00000562166 1838 ntBASIC20.03■□□□□ 0.8
BDNFP23560 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.03■□□□□ 0.8
BDNFP23560 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
BDNFP23560 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
BDNFP23560 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
BDNFP23560 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BDNFP23560 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.02■□□□□ 0.8
BDNFP23560 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.02■□□□□ 0.8
BDNFP23560 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.02■□□□□ 0.8
BDNFP23560 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.02■□□□□ 0.8
BDNFP23560 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.02■□□□□ 0.8
BDNFP23560 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.02■□□□□ 0.8
BDNFP23560 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.8
BDNFP23560 AC141257.4-201ENST00000634557 245 ntBASIC20.02■□□□□ 0.8
BDNFP23560 AC136944.6-201ENST00000634818 245 ntBASIC20.02■□□□□ 0.8
BDNFP23560 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.02■□□□□ 0.8
BDNFP23560 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.02■□□□□ 0.8
BDNFP23560 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.02■□□□□ 0.8
BDNFP23560 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
BDNFP23560 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
BDNFP23560 IRX1P1-201ENST00000438849 1838 ntBASIC20.02■□□□□ 0.79
BDNFP23560 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
BDNFP23560 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
BDNFP23560 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.02■□□□□ 0.79
BDNFP23560 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.01■□□□□ 0.79
BDNFP23560 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
BDNFP23560 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.01■□□□□ 0.79
BDNFP23560 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
BDNFP23560 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 DUX4L26-201ENST00000489078 1255 ntBASIC20.01■□□□□ 0.79
BDNFP23560 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 AL512604.3-201ENST00000569583 964 ntBASIC20.01■□□□□ 0.79
BDNFP23560 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.01■□□□□ 0.79
BDNFP23560 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.01■□□□□ 0.79
BDNFP23560 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
BDNFP23560 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.01■□□□□ 0.79
BDNFP23560 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.01■□□□□ 0.79
BDNFP23560 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.01■□□□□ 0.79
BDNFP23560 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.01■□□□□ 0.79
BDNFP23560 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20■□□□□ 0.79
BDNFP23560 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20■□□□□ 0.79
BDNFP23560 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20■□□□□ 0.79
BDNFP23560 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
BDNFP23560 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20■□□□□ 0.79
BDNFP23560 FEM1AP3-201ENST00000403722 1741 ntBASIC20■□□□□ 0.79
BDNFP23560 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
BDNFP23560 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 AC117947.1-201ENST00000427448 529 ntBASIC20■□□□□ 0.79
BDNFP23560 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20■□□□□ 0.79
BDNFP23560 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20■□□□□ 0.79
BDNFP23560 AC139887.4-201ENST00000607877 719 ntBASIC20■□□□□ 0.79
BDNFP23560 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20■□□□□ 0.79
BDNFP23560 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20■□□□□ 0.79
BDNFP23560 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20■□□□□ 0.79
BDNFP23560 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
BDNFP23560 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20■□□□□ 0.79
BDNFP23560 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.99■□□□□ 0.79
BDNFP23560 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms