Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CHD1O14646 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC30.82■■■□□ 2.52
CHD1O14646 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
CHD1O14646 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CHD1O14646 LSR-203ENST00000360798 1963 ntTSL 2 BASIC30.82■■■□□ 2.52
CHD1O14646 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC30.81■■■□□ 2.52
CHD1O14646 DNAJB3-202ENST00000449667 1266 ntBASIC30.81■■■□□ 2.52
CHD1O14646 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC30.81■■■□□ 2.52
CHD1O14646 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC30.81■■■□□ 2.52
CHD1O14646 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC30.81■■■□□ 2.52
CHD1O14646 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
CHD1O14646 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CHD1O14646 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
CHD1O14646 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
CHD1O14646 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC30.81■■■□□ 2.52
CHD1O14646 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
CHD1O14646 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CHD1O14646 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC30.81■■■□□ 2.52
CHD1O14646 FGFR3P6-201ENST00000457012 610 ntBASIC30.81■■■□□ 2.52
CHD1O14646 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
CHD1O14646 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CHD1O14646 IGHV3-41-201ENST00000613121 348 ntBASIC30.81■■■□□ 2.52
CHD1O14646 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC30.81■■■□□ 2.52
CHD1O14646 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC30.8■■■□□ 2.52
CHD1O14646 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CHD1O14646 FIS1-203ENST00000442303 631 ntTSL 3 BASIC30.8■■■□□ 2.52
CHD1O14646 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC30.8■■■□□ 2.52
CHD1O14646 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC30.8■■■□□ 2.52
CHD1O14646 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CHD1O14646 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
CHD1O14646 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CHD1O14646 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC30.79■■■□□ 2.52
CHD1O14646 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CHD1O14646 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC30.79■■■□□ 2.52
CHD1O14646 AC096582.2-201ENST00000510860 516 ntBASIC30.79■■■□□ 2.52
CHD1O14646 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC30.79■■■□□ 2.52
CHD1O14646 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC30.79■■■□□ 2.52
CHD1O14646 MIR3197-201ENST00000582241 73 ntBASIC30.79■■■□□ 2.52
CHD1O14646 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC30.79■■■□□ 2.52
CHD1O14646 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC30.79■■■□□ 2.52
CHD1O14646 GOLGA6L5P-202ENST00000515341 1828 ntBASIC30.79■■■□□ 2.52
CHD1O14646 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CHD1O14646 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CHD1O14646 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC30.79■■■□□ 2.52
CHD1O14646 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
CHD1O14646 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CHD1O14646 AC104417.2-201ENST00000562989 1793 ntBASIC30.79■■■□□ 2.52
CHD1O14646 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CHD1O14646 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CHD1O14646 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC30.78■■■□□ 2.52
CHD1O14646 AC104390.1-201ENST00000555663 520 ntBASIC30.78■■■□□ 2.52
CHD1O14646 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CHD1O14646 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC30.78■■■□□ 2.52
CHD1O14646 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC30.78■■■□□ 2.52
CHD1O14646 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC30.78■■■□□ 2.52
CHD1O14646 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CHD1O14646 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CHD1O14646 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC30.78■■■□□ 2.52
CHD1O14646 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CHD1O14646 LBH-204ENST00000406087 559 ntTSL 4 BASIC30.78■■■□□ 2.52
CHD1O14646 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC30.78■■■□□ 2.52
CHD1O14646 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC30.78■■■□□ 2.52
CHD1O14646 AL355877.3-201ENST00000622820 899 ntBASIC30.78■■■□□ 2.52
CHD1O14646 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CHD1O14646 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC30.78■■■□□ 2.52
CHD1O14646 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC30.77■■■□□ 2.52
CHD1O14646 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CHD1O14646 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC30.77■■■□□ 2.52
CHD1O14646 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC30.77■■■□□ 2.52
CHD1O14646 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC30.77■■■□□ 2.52
CHD1O14646 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC30.77■■■□□ 2.52
CHD1O14646 FAM215A-202ENST00000632077 792 ntBASIC30.77■■■□□ 2.52
CHD1O14646 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC30.77■■■□□ 2.52
CHD1O14646 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CHD1O14646 HOXB1-202ENST00000577092 1414 ntBASIC30.76■■■□□ 2.52
CHD1O14646 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.52
CHD1O14646 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CHD1O14646 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC30.76■■■□□ 2.52
CHD1O14646 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC30.76■■■□□ 2.52
CHD1O14646 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC30.76■■■□□ 2.52
CHD1O14646 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC30.76■■■□□ 2.52
CHD1O14646 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC30.76■■■□□ 2.52
CHD1O14646 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CHD1O14646 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CHD1O14646 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC30.76■■■□□ 2.51
CHD1O14646 METTL21AP1-201ENST00000438852 635 ntBASIC30.76■■■□□ 2.51
CHD1O14646 GUSBP12-201ENST00000513727 720 ntBASIC30.76■■■□□ 2.51
CHD1O14646 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC30.76■■■□□ 2.51
CHD1O14646 AC027601.4-201ENST00000611259 610 ntBASIC30.76■■■□□ 2.51
CHD1O14646 AC116407.3-201ENST00000623905 1129 ntBASIC30.76■■■□□ 2.51
CHD1O14646 CAND2-206ENST00000626378 333 ntTSL 5 BASIC30.76■■■□□ 2.51
CHD1O14646 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC30.75■■■□□ 2.51
CHD1O14646 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CHD1O14646 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CHD1O14646 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC30.75■■■□□ 2.51
CHD1O14646 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CHD1O14646 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC30.75■■■□□ 2.51
CHD1O14646 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC30.75■■■□□ 2.51
CHD1O14646 MINOS1P3-201ENST00000457048 203 ntBASIC30.75■■■□□ 2.51
CHD1O14646 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms