Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 RNA5SP205-201ENST00000364653 136 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 RNA5SP151-201ENST00000365632 117 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-213P-201ENST00000384051 104 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 MIR493-201ENST00000385254 89 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 SDHCP2-201ENST00000398565 501 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 PPIAP31-201ENST00000405422 495 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 RNA5SP239-201ENST00000410218 129 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 RPL37P18-201ENST00000411602 243 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 ELOCP19-201ENST00000411919 318 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 FTH1P6-201ENST00000430768 320 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AL356535.1-201ENST00000440335 398 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AC010095.1-201ENST00000443543 144 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AC093840.1-201ENST00000511599 336 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-191P-201ENST00000516295 94 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-971P-201ENST00000516920 106 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-58P-201ENST00000517143 103 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AP004242.1-201ENST00000533701 349 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 MIR4737-201ENST00000583979 81 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AL590392.1-201ENST00000604960 446 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 MIR6853-201ENST00000619642 74 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 AC048347.1-201ENST00000624621 427 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 ZNF137P-201ENST00000456718 1920 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 SRP72P2-201ENST00000344851 1979 ntBASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.12□□□□□ -1.75
HIF3AQ9Y2N7 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 AC022336.2-201ENST00000568966 2538 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 RNU1-108P-201ENST00000362556 161 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 SNORD32A-201ENST00000364805 84 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 SNORA71.2-201ENST00000364941 134 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 RNU1-73P-201ENST00000383971 164 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 MIR607-201ENST00000385241 96 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 MIR708-201ENST00000390708 88 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 HMGN2P30-201ENST00000423237 256 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 RPL23AP95-201ENST00000426806 265 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 NDUFB4P6-201ENST00000436819 366 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 RPL37P4-201ENST00000448908 268 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 RPS27AP9-201ENST00000477681 438 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 AC231760.1-201ENST00000498002 260 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 SUMO2P18-201ENST00000518873 252 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 CARD18-203ENST00000532895 422 ntTSL 2 BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 AL359881.1-201ENST00000602916 267 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 AC022441.3-201ENST00000605737 136 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 AC091905.2-201ENST00000623143 306 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 AC092593.1-201ENST00000515413 1815 ntBASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HIF3AQ9Y2N7 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 RNU5B-2P-201ENST00000363036 113 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 RNA5SP443-201ENST00000363083 132 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 Y_RNA.218-201ENST00000364218 104 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-312P-201ENST00000364629 107 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 SNORA36A-201ENST00000384221 132 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 SNORD116-20-201ENST00000384529 92 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 MIR550A3-201ENST00000390735 95 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 MTHFD2P2-201ENST00000407725 247 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 snoU13.6-201ENST00000458785 104 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AC010409.1-201ENST00000487382 476 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AC097462.2-201ENST00000504623 481 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AC108043.1-201ENST00000512696 574 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 RNU6-1333P-201ENST00000516162 93 ntBASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HIF3AQ9Y2N7 HSPE1P5-201ENST00000561489 272 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms