Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC3.53□□□□□ -1.84
DDX56Q9NY93 RPL21P23-201ENST00000446654 460 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 RBMY2UP-201ENST00000453474 324 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 AC106707.2-201ENST00000484182 374 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.53□□□□□ -1.84
DDX56Q9NY93 FCF1P8-201ENST00000510322 597 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 RNU7-30P-201ENST00000516835 62 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 SCOCP1-201ENST00000554676 349 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 AC027176.1-201ENST00000560204 514 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 AC026464.5-201ENST00000562497 722 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.53□□□□□ -1.84
DDX56Q9NY93 MIR4742-201ENST00000581069 85 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 MIR3942-201ENST00000585264 109 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.53□□□□□ -1.84
DDX56Q9NY93 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.53□□□□□ -1.84
DDX56Q9NY93 uc_338.15-201ENST00000615470 191 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 AC009093.8-201ENST00000641769 292 ntBASIC3.53□□□□□ -1.84
DDX56Q9NY93 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
DDX56Q9NY93 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
DDX56Q9NY93 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
DDX56Q9NY93 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
DDX56Q9NY93 MTND4P23-201ENST00000447723 1363 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
DDX56Q9NY93 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
DDX56Q9NY93 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
DDX56Q9NY93 RPL9P7-201ENST00000330965 580 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 U6atac.2-201ENST00000408644 118 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 PDCL2P1-201ENST00000419302 352 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 NCOR1P3-201ENST00000420479 303 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX56Q9NY93 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.52□□□□□ -1.85
DDX56Q9NY93 AC243964.1-201ENST00000441814 261 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 RPL39P29-201ENST00000447779 157 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.52□□□□□ -1.85
DDX56Q9NY93 RPL9P9-202ENST00000466501 579 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 RPL23AP70-201ENST00000483361 460 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 AC096576.1-201ENST00000489014 359 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.52□□□□□ -1.85
DDX56Q9NY93 RNU6-273P-201ENST00000516937 96 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 AC115990.1-201ENST00000526957 301 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 AC138761.3-201ENST00000579993 334 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 MIR3199-1-201ENST00000582434 88 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 AC063943.3-201ENST00000615562 356 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 AL449363.1-201ENST00000617815 186 ntBASIC3.52□□□□□ -1.85
DDX56Q9NY93 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
DDX56Q9NY93 MTND4P27-201ENST00000450813 1354 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 AC080128.1-201ENST00000474389 1917 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 Y_RNA.166-201ENST00000363730 102 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 RNU6-1180P-201ENST00000364935 107 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 RNU1-140P-201ENST00000365040 165 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 SNORD81.2-201ENST00000365153 76 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
DDX56Q9NY93 RNU1-57P-201ENST00000384491 166 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 SNORD17-201ENST00000390930 237 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 RN7SKP202-201ENST00000410439 330 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 SYF2P2-201ENST00000417620 583 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.51□□□□□ -1.85
DDX56Q9NY93 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.51□□□□□ -1.85
DDX56Q9NY93 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.51□□□□□ -1.85
DDX56Q9NY93 AC130509.1-201ENST00000464158 433 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 AC023141.11-201ENST00000508864 202 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 RPL39P5-202ENST00000512505 151 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 RNU6-566P-201ENST00000516790 107 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.51□□□□□ -1.85
DDX56Q9NY93 TRAV32-201ENST00000553993 340 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.51□□□□□ -1.85
DDX56Q9NY93 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.51□□□□□ -1.85
DDX56Q9NY93 AC069294.1-201ENST00000608397 350 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 uc_338.5-201ENST00000611839 155 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 Y_RNA.804-201ENST00000615262 101 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 AC073476.4-201ENST00000628409 72 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 AC241585.2-209ENST00000638217 143 ntBASIC3.51□□□□□ -1.85
DDX56Q9NY93 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.51□□□□□ -1.85
DDX56Q9NY93 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.51□□□□□ -1.85
DDX56Q9NY93 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
DDX56Q9NY93 AC093010.3-201ENST00000570269 15214 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
DDX56Q9NY93 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.5□□□□□ -1.85
DDX56Q9NY93 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
DDX56Q9NY93 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
DDX56Q9NY93 RNA5SP124-201ENST00000362739 110 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 RNU6-461P-201ENST00000364195 107 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 RNA5SP479-201ENST00000364858 117 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 BTF3L4P2-201ENST00000392798 346 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 AL360182.1-201ENST00000397433 468 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 AL356967.1-201ENST00000406305 431 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 AL030996.1-201ENST00000411430 235 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.5□□□□□ -1.85
DDX56Q9NY93 AC104332.2-201ENST00000429959 156 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.5□□□□□ -1.85
DDX56Q9NY93 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.5□□□□□ -1.85
DDX56Q9NY93 RPS12P18-201ENST00000442381 270 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 SNRPEP8-201ENST00000442866 260 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.5□□□□□ -1.85
DDX56Q9NY93 AMD1P1-201ENST00000457220 922 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 RN7SL442P-201ENST00000473804 320 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 RPL30P12-201ENST00000474666 353 ntBASIC3.5□□□□□ -1.85
DDX56Q9NY93 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms