Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC139453.3-201ENST00000493276 369 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 LAMTOR3P2-201ENST00000504479 232 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 MTND5P13-201ENST00000513046 1079 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 RN7SKP49-201ENST00000516675 260 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 SNORA31.19-201ENST00000517079 126 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 DEFB108A-201ENST00000530110 222 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC104072.1-201ENST00000568817 668 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC136618.2-201ENST00000575091 400 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 MIR5000-201ENST00000577717 103 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 MIR4293-201ENST00000584305 78 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC107952.2-201ENST00000606048 486 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC007792.1-201ENST00000623023 402 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 RNU5E-1-201ENST00000362477 120 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 Y_RNA.234-201ENST00000364409 97 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 MIR222-201ENST00000384992 110 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 RNU6-278P-201ENST00000390945 109 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 SRIP3-201ENST00000413200 219 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC079448.1-201ENST00000449377 373 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AP001324.2-201ENST00000461163 319 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 SNORA48.11-201ENST00000517015 89 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 RNU6-334P-201ENST00000517072 102 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 RNA5SP165-201ENST00000517142 115 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 MRPS36P5-201ENST00000551909 298 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 SUB1P4-201ENST00000566062 339 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 MIR4422-201ENST00000581938 83 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 RNU6-88P-201ENST00000606801 100 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 AC124016.2-201ENST00000610058 665 ntBASIC0.89□□□□□ -2.27
SCN3AQ9NY46 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC0.89□□□□□ -2.27
SCN3AQ9NY46 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RNU6-944P-201ENST00000364023 107 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AL359634.1-202ENST00000404721 284 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RAC1P6-201ENST00000423911 575 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 MTND4P15-201ENST00000437913 1033 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RNU6-333P-201ENST00000459117 107 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 SNORA31.3-201ENST00000516029 96 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AC087897.1-201ENST00000550134 156 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 IMMP1LP2-201ENST00000552954 492 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AC091152.3-201ENST00000604227 325 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RPL21P136-201ENST00000605378 396 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AC017037.3-201ENST00000625016 472 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AP000776.1-201ENST00000530032 1663 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 DLEU2_6.3-201ENST00000340052 136 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RNU5B-4P-201ENST00000363508 111 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RNU6-744P-201ENST00000365557 107 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RNU6-338P-201ENST00000383888 105 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RNU6-1316P-201ENST00000384242 108 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RNU6-622P-201ENST00000384272 103 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RNU2-7P-201ENST00000410794 178 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AL953862.1-201ENST00000423016 168 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 TRBV26OR9-2-201ENST00000432077 293 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RPS15AP9-201ENST00000439856 381 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AL096829.2-201ENST00000446582 742 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RPL9P9-202ENST00000466501 579 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AC010631.1-201ENST00000474150 156 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RNU6-1183P-201ENST00000517054 60 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 RNU6-1315P-201ENST00000517187 99 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 MTCO2P15-201ENST00000532655 656 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AL355472.4-201ENST00000610233 626 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 AC108706.1-201ENST00000611053 297 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 DLEU2_6.2-201ENST00000620994 136 ntBASIC0.88□□□□□ -2.27
SCN3AQ9NY46 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
SCN3AQ9NY46 HAUS6P2-201ENST00000433254 2404 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AC138393.1-203ENST00000327086 343 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 Y_RNA.36-201ENST00000362602 112 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 SNORD114-27-201ENST00000363766 70 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 RNU6-609P-201ENST00000365459 107 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
SCN3AQ9NY46 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AL359704.1-201ENST00000411586 781 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC0.87□□□□□ -2.27
SCN3AQ9NY46 NCOR1P3-201ENST00000420479 303 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AC008267.5-201ENST00000424928 265 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AC118469.1-201ENST00000442943 488 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms