Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AL133173.2-201ENST00000614270 90 ntBASIC1.63□□□□□ -2.15
EXOSC4Q9NPD3 AL359547.2-201ENST00000615810 418 ntBASIC1.63□□□□□ -2.15
EXOSC4Q9NPD3 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.63□□□□□ -2.15
EXOSC4Q9NPD3 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.63□□□□□ -2.15
EXOSC4Q9NPD3 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.63□□□□□ -2.15
EXOSC4Q9NPD3 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
EXOSC4Q9NPD3 AC103710.2-202ENST00000641454 2853 ntBASIC1.63□□□□□ -2.15
EXOSC4Q9NPD3 AC009487.4-201ENST00000624969 3585 ntBASIC1.63□□□□□ -2.15
EXOSC4Q9NPD3 MTND4P4-201ENST00000439033 1366 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 SNORA20.2-201ENST00000383922 131 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 RNU6-1032P-201ENST00000384100 107 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AL591034.2-201ENST00000402839 359 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 Z99497.1-201ENST00000421282 135 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AL353706.1-201ENST00000436728 494 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 RPS24P1-201ENST00000438550 371 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 ART2BP-201ENST00000453501 499 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 MTCO2P29-201ENST00000465212 189 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 RPL7P43-201ENST00000478876 753 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 MRPS17P9-201ENST00000511924 393 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 SCARNA24.1-201ENST00000516465 137 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 HSPE1P18-201ENST00000517602 280 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AC079598.5-201ENST00000547460 117 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 MTCYBP33-201ENST00000575007 1130 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AC008521.1-201ENST00000587471 187 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AL022154.1-201ENST00000604698 785 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AL451064.1-201ENST00000607718 471 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AC091304.6-201ENST00000619761 202 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 MIR5739-201ENST00000619803 80 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AL157786.1-207ENST00000627771 695 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AC008993.2-201ENST00000631744 806 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 AC092881.1-201ENST00000638218 2733 ntBASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
EXOSC4Q9NPD3 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 RNU6-169P-201ENST00000365336 107 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 RNU6-1179P-201ENST00000384667 107 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 MIR10A-201ENST00000385043 110 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 RNA5SP111-201ENST00000411386 101 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 PGBD4P6-201ENST00000421501 610 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 MTATP6P16-201ENST00000434543 526 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 MTND6P13-201ENST00000443510 523 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 RPL38P4-201ENST00000502376 214 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 HMGB1P35-201ENST00000503360 598 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 RNU5B-3P-201ENST00000516601 115 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AC060788.1-201ENST00000521318 469 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 BNIP3P8-201ENST00000597863 560 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AL670379.4-201ENST00000605279 254 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 Z99289.3-201ENST00000605586 594 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AC087045.1-201ENST00000605856 382 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AC110994.2-201ENST00000635481 492 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 RBBP8P1-201ENST00000449447 1844 ntBASIC1.61□□□□□ -2.15
EXOSC4Q9NPD3 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 ZNF355P-201ENST00000427301 3216 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 RNU6-942P-201ENST00000363002 107 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 SNORA25B-201ENST00000365507 128 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 RNU6-61P-201ENST00000365528 109 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 GSTA9P-201ENST00000406231 611 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 RPS3AP3-201ENST00000411933 242 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AL353621.1-201ENST00000418219 243 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 CYCSP46-201ENST00000423569 204 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 ISCA1P6-201ENST00000427740 390 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 RPL7P34-201ENST00000433316 712 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AC000111.3-201ENST00000433478 193 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AL445567.1-201ENST00000439121 144 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AL161788.1-201ENST00000441805 169 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 CALM1P1-201ENST00000442082 433 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 CKS1BP2-201ENST00000497342 240 ntBASIC1.6□□□□□ -2.15
EXOSC4Q9NPD3 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms