Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 AC022432.1-201ENST00000595739 310 ntBASIC4□□□□□ -1.77
CCDC113Q9H0I3 VN1R107P-201ENST00000601784 209 ntBASIC4□□□□□ -1.77
CCDC113Q9H0I3 PART1_1.1-201ENST00000611761 217 ntBASIC4□□□□□ -1.77
CCDC113Q9H0I3 AC024581.2-201ENST00000619986 252 ntBASIC4□□□□□ -1.77
CCDC113Q9H0I3 AC244205.2-202ENST00000635781 342 ntBASIC4□□□□□ -1.77
CCDC113Q9H0I3 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC113Q9H0I3 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC113Q9H0I3 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC113Q9H0I3 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC113Q9H0I3 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
CCDC113Q9H0I3 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 SNORD56.1-201ENST00000362913 68 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 Y_RNA.216-201ENST00000364205 93 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 MIR670-201ENST00000390142 98 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 snosnR66.1-201ENST00000391095 99 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 RHEBP3-201ENST00000411920 351 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 AL161651.1-201ENST00000440882 223 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 AC011816.1-201ENST00000441346 546 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 AL137792.2-201ENST00000443484 235 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 AC010265.1-201ENST00000513509 211 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 RN7SKP83-201ENST00000516512 178 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 AC009163.5-201ENST00000575421 637 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 MIR3922-201ENST00000585192 84 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 AC016925.2-201ENST00000605108 242 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
CCDC113Q9H0I3 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 Y_RNA.28-201ENST00000362554 111 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 Y_RNA.31-201ENST00000362574 102 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 RNA5SP119-201ENST00000362715 117 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 Y_RNA.112-201ENST00000363250 102 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 Y_RNA.428-201ENST00000384078 102 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 Y_RNA.463-201ENST00000384271 102 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 AC074117.2-201ENST00000417130 397 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 AL035666.1-201ENST00000446195 348 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 SNORD105B-201ENST00000458770 79 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 RNU7-170P-201ENST00000459303 61 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 RNU5F-8P-201ENST00000515941 111 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 SNORA70.18-201ENST00000516696 98 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 RNU6-699P-201ENST00000517081 110 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 RNU6-711P-201ENST00000517255 106 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 AC023442.1-201ENST00000531247 422 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 MIR92B-201ENST00000607575 96 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 AC040896.1-201ENST00000613819 479 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 AC091152.2-201ENST00000591628 2569 ntBASIC3.98□□□□□ -1.77
CCDC113Q9H0I3 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 SNORA22B-201ENST00000383876 138 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 AC245291.1-201ENST00000419501 328 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 EIF4EP2-201ENST00000422816 654 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 AL353997.1-201ENST00000432936 108 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 RPL17P19-201ENST00000489069 552 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 ACA59.2-201ENST00000517061 156 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 AC022634.1-201ENST00000520765 532 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 CBX3P8-201ENST00000532412 525 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 AC019159.1-201ENST00000605094 187 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 AC083806.3-201ENST00000614016 455 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 HMGB1P24-202ENST00000615653 685 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 MIR6075-201ENST00000620782 95 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 MIR3529-201ENST00000637713 78 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 AC241585.2-209ENST00000638217 143 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 MTND5P30-201ENST00000452896 1731 ntBASIC3.97□□□□□ -1.77
CCDC113Q9H0I3 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms