Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL627311.1-201ENST00000431514 115 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AL645568.3-201ENST00000433683 316 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AC073910.1-201ENST00000445047 438 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AL031183.1-201ENST00000457667 207 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 RNU7-187P-201ENST00000458985 68 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 RPS27AP10-201ENST00000496103 208 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AC114801.2-201ENST00000503825 781 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 MIR892C-201ENST00000516410 77 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.715-201ENST00000517082 110 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 NACAP3-201ENST00000552100 481 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 MIR3128-201ENST00000581957 66 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AC005899.2-201ENST00000584353 90 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AC078899.3-201ENST00000599065 212 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AL645944.1-201ENST00000603857 493 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AL031601.2-202ENST00000622650 282 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 AC010615.1-201ENST00000594254 1764 ntBASIC3.74□□□□□ -1.81
CLIP3Q96DZ5 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 MAPK10-362ENST00000641864 4484 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.152-201ENST00000363578 100 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 SNORA14A-201ENST00000364773 135 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.424-201ENST00000384063 103 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.461-201ENST00000384263 103 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.483-201ENST00000384380 101 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 MIR670-201ENST00000390142 98 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 SNORA3.3-201ENST00000408712 125 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 SNORA3C-201ENST00000408792 125 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AC097713.2-201ENST00000430199 356 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 CYCSP32-201ENST00000440548 321 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 RNU7-23P-201ENST00000459465 62 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AP002884.2-201ENST00000471647 395 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AC084198.1-201ENST00000477747 402 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 RPS29P20-201ENST00000489592 171 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AC025554.1-201ENST00000505641 188 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AC105758.1-201ENST00000506038 399 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AC010265.1-201ENST00000513509 211 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 RNU6-307P-201ENST00000516743 106 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 RNU6-1183P-201ENST00000517054 60 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 IGKV2-38-201ENST00000517443 247 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AP000889.1-201ENST00000530968 660 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 HSBP1P1-201ENST00000555205 166 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AC005344.1-201ENST00000613391 459 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AL161629.2-201ENST00000615347 275 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AL773545.4-201ENST00000637262 310 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 AL513478.4-201ENST00000641636 310 ntBASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CLIP3Q96DZ5 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 NCAPGP1-201ENST00000505112 1814 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 AC138393.1-203ENST00000327086 343 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.26-201ENST00000362539 101 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.60-201ENST00000362831 98 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.214-201ENST00000364201 112 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 SNORD14B-201ENST00000364533 90 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.276-201ENST00000364732 109 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 Y_RNA.562-201ENST00000384695 113 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 EI24P2-201ENST00000397776 1076 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 AL592148.1-201ENST00000413568 445 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 GOT2P5-201ENST00000433995 546 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 AC011005.2-201ENST00000487324 359 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 RNU1-86P-201ENST00000516108 154 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 RNU6-1023P-201ENST00000516137 106 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 RNU6-406P-201ENST00000516470 107 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 RNU1-107P-201ENST00000516617 154 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 AC087369.1-201ENST00000520775 996 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 MIR5188-201ENST00000583467 113 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 HMGN2P15-201ENST00000585707 270 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 ELOCP5-201ENST00000604924 333 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 AC004852.3-201ENST00000614131 326 ntBASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CLIP3Q96DZ5 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 169 ms