Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 OR5H15-201ENST00000383696 930 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 MIR578-201ENST00000384828 96 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 ZNF736P8Y-201ENST00000451913 669 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 SNRPFP4-201ENST00000456366 242 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 BZW1P2-201ENST00000473537 826 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 RBBP4P6-201ENST00000508098 202 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 FABP5P5-201ENST00000515537 406 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 RN7SKP287-201ENST00000516546 266 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 RNA5SP137-201ENST00000516833 135 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 RNU6-295P-201ENST00000516901 104 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 RNU6-232P-201ENST00000517144 64 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AC109329.1-201ENST00000518744 317 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AC107953.1-201ENST00000522216 297 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AC008015.1-201ENST00000555505 465 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 MIR4287-201ENST00000579398 78 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AC005771.1-201ENST00000585581 349 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 BNIP3P8-201ENST00000597863 560 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AL353778.1-201ENST00000603149 408 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AC012360.2-201ENST00000609349 391 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AC022202.1-201ENST00000613515 211 ntBASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.22□□□□□ -2.05
HDDC3Q8N4P3 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.21□□□□□ -2.05
HDDC3Q8N4P3 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 Y_RNA.164-201ENST00000363709 102 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 SNORA67.3-201ENST00000384366 140 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 SNORA80E-201ENST00000384744 137 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 MIR17-201ENST00000385012 84 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 PGBD4P6-201ENST00000421501 610 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 TAF9P1-201ENST00000445421 515 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 TAF9P2-201ENST00000454958 515 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AC034114.1-201ENST00000520293 285 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 PRELID2P1-201ENST00000552837 301 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AC026271.5-201ENST00000577873 130 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 MIR5692A1-201ENST00000580523 69 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 WISP1-OT1-201ENST00000602893 642 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AL121917.1-203ENST00000605534 577 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AC098614.4-201ENST00000607601 462 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AP001486.3-201ENST00000615334 372 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 AF246928.1-201ENST00000623768 87 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.21□□□□□ -2.06
HDDC3Q8N4P3 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 RNU6-212P-201ENST00000362642 104 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 RNU6-655P-201ENST00000362858 107 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 RNU6-387P-201ENST00000411331 105 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 AC091965.2-201ENST00000512324 613 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 AC106038.2-201ENST00000520706 568 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 IMMP1LP2-201ENST00000552954 492 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 MIR548AB-201ENST00000584917 84 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 AC008521.1-201ENST00000587471 187 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 AC012065.4-201ENST00000602445 679 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 AC108479.2-201ENST00000617314 601 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 AC026585.1-201ENST00000619582 524 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 AC079248.2-201ENST00000623779 326 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 MTND4P4-201ENST00000439033 1366 ntBASIC2.2□□□□□ -2.06
HDDC3Q8N4P3 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
HDDC3Q8N4P3 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.19□□□□□ -2.06
HDDC3Q8N4P3 Y_RNA.22-201ENST00000362492 102 ntBASIC2.19□□□□□ -2.06
HDDC3Q8N4P3 RNU6-61P-201ENST00000365528 109 ntBASIC2.19□□□□□ -2.06
HDDC3Q8N4P3 U3.40-201ENST00000408706 208 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms