Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC3.11□□□□□ -1.91
CTCFP49711 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.11□□□□□ -1.91
CTCFP49711 MTCO3P13-201ENST00000577757 781 ntBASIC3.11□□□□□ -1.91
CTCFP49711 MIR548AC-201ENST00000585049 88 ntBASIC3.11□□□□□ -1.91
CTCFP49711 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.11□□□□□ -1.91
CTCFP49711 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.11□□□□□ -1.91
CTCFP49711 AL354950.2-201ENST00000617939 290 ntBASIC3.11□□□□□ -1.91
CTCFP49711 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.11□□□□□ -1.91
CTCFP49711 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
CTCFP49711 AL354685.2-201ENST00000448218 1447 ntBASIC3.1□□□□□ -1.91
CTCFP49711 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
CTCFP49711 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CTCFP49711 SNORD3E-201ENST00000362899 217 ntBASIC3.1□□□□□ -1.91
CTCFP49711 Y_RNA.255-201ENST00000364581 97 ntBASIC3.1□□□□□ -1.91
CTCFP49711 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.1□□□□□ -1.91
CTCFP49711 Z98749.2-208ENST00000381646 500 ntBASIC3.1□□□□□ -1.91
CTCFP49711 Y_RNA.481-201ENST00000384373 102 ntBASIC3.1□□□□□ -1.91
CTCFP49711 Y_RNA.554-201ENST00000384672 102 ntBASIC3.1□□□□□ -1.91
CTCFP49711 AL512633.1-201ENST00000399931 655 ntBASIC3.1□□□□□ -1.91
CTCFP49711 BX682237.1-201ENST00000415016 335 ntBASIC3.1□□□□□ -1.91
CTCFP49711 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.1□□□□□ -1.91
CTCFP49711 GTF2IP20-201ENST00000431663 360 ntBASIC3.1□□□□□ -1.91
CTCFP49711 AC003071.1-201ENST00000451219 789 ntBASIC3.1□□□□□ -1.91
CTCFP49711 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.1□□□□□ -1.91
CTCFP49711 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.1□□□□□ -1.91
CTCFP49711 RNU6-835P-201ENST00000516974 104 ntBASIC3.1□□□□□ -1.91
CTCFP49711 RNU6-1183P-201ENST00000517054 60 ntBASIC3.1□□□□□ -1.91
CTCFP49711 AC022634.1-201ENST00000520765 532 ntBASIC3.1□□□□□ -1.91
CTCFP49711 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC3.1□□□□□ -1.91
CTCFP49711 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.1□□□□□ -1.91
CTCFP49711 AL512360.1-201ENST00000555346 234 ntBASIC3.1□□□□□ -1.91
CTCFP49711 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.1□□□□□ -1.91
CTCFP49711 AC025281.1-201ENST00000567026 265 ntBASIC3.1□□□□□ -1.91
CTCFP49711 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.1□□□□□ -1.91
CTCFP49711 AC093788.1-201ENST00000609356 927 ntBASIC3.1□□□□□ -1.91
CTCFP49711 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.1□□□□□ -1.91
CTCFP49711 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.1□□□□□ -1.91
CTCFP49711 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.1□□□□□ -1.91
CTCFP49711 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CTCFP49711 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
CTCFP49711 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CTCFP49711 AC110491.1-201ENST00000562191 2010 ntBASIC3.09□□□□□ -1.91
CTCFP49711 MIR337-201ENST00000362281 93 ntBASIC3.09□□□□□ -1.91
CTCFP49711 Y_RNA.6-201ENST00000362350 114 ntBASIC3.09□□□□□ -1.91
CTCFP49711 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.09□□□□□ -1.91
CTCFP49711 RNU6-166P-201ENST00000384371 107 ntBASIC3.09□□□□□ -1.91
CTCFP49711 AL669831.1-202ENST00000428504 417 ntBASIC3.09□□□□□ -1.91
CTCFP49711 GTF2IP13-201ENST00000438487 386 ntBASIC3.09□□□□□ -1.91
CTCFP49711 AC098831.1-201ENST00000440661 216 ntBASIC3.09□□□□□ -1.91
CTCFP49711 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.09□□□□□ -1.91
CTCFP49711 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.09□□□□□ -1.91
CTCFP49711 NDUFAF4P4-201ENST00000454883 502 ntBASIC3.09□□□□□ -1.91
CTCFP49711 TRBV1-201ENST00000476502 284 ntBASIC3.09□□□□□ -1.91
CTCFP49711 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.09□□□□□ -1.91
CTCFP49711 Y_RNA.704-201ENST00000516851 102 ntBASIC3.09□□□□□ -1.91
CTCFP49711 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.09□□□□□ -1.91
CTCFP49711 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.09□□□□□ -1.91
CTCFP49711 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.09□□□□□ -1.91
CTCFP49711 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.09□□□□□ -1.91
CTCFP49711 ZNF519P2-201ENST00000557032 169 ntBASIC3.09□□□□□ -1.91
CTCFP49711 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.09□□□□□ -1.91
CTCFP49711 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.09□□□□□ -1.91
CTCFP49711 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.09□□□□□ -1.91
CTCFP49711 AC023043.3-201ENST00000593113 385 ntBASIC3.09□□□□□ -1.91
CTCFP49711 AC025165.5-201ENST00000602802 578 ntBASIC3.09□□□□□ -1.91
CTCFP49711 RPL23AP88-201ENST00000605759 454 ntBASIC3.09□□□□□ -1.91
CTCFP49711 U4.3-201ENST00000621047 82 ntBASIC3.09□□□□□ -1.91
CTCFP49711 AC010338.1-201ENST00000621823 717 ntBASIC3.09□□□□□ -1.91
CTCFP49711 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
CTCFP49711 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.09□□□□□ -1.92
CTCFP49711 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
CTCFP49711 AL161431.1-201ENST00000618966 4205 ntBASIC3.09□□□□□ -1.92
CTCFP49711 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.09□□□□□ -1.92
CTCFP49711 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.08□□□□□ -1.92
CTCFP49711 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CTCFP49711 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CTCFP49711 MIR767-201ENST00000390228 109 ntBASIC3.08□□□□□ -1.92
CTCFP49711 Y_RNA.599-201ENST00000410489 109 ntBASIC3.08□□□□□ -1.92
CTCFP49711 RNA5SP492-201ENST00000411330 114 ntBASIC3.08□□□□□ -1.92
CTCFP49711 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
CTCFP49711 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.08□□□□□ -1.92
CTCFP49711 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.08□□□□□ -1.92
CTCFP49711 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.08□□□□□ -1.92
CTCFP49711 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.08□□□□□ -1.92
CTCFP49711 RPS15AP5-201ENST00000436276 388 ntBASIC3.08□□□□□ -1.92
CTCFP49711 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.08□□□□□ -1.92
CTCFP49711 AC009296.1-201ENST00000443146 155 ntBASIC3.08□□□□□ -1.92
CTCFP49711 AC096638.1-201ENST00000444678 216 ntBASIC3.08□□□□□ -1.92
CTCFP49711 RNU7-180P-201ENST00000459240 63 ntBASIC3.08□□□□□ -1.92
CTCFP49711 RNU6-261P-201ENST00000459506 102 ntBASIC3.08□□□□□ -1.92
CTCFP49711 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.08□□□□□ -1.92
CTCFP49711 SCARNA17.1-201ENST00000516211 143 ntBASIC3.08□□□□□ -1.92
CTCFP49711 SCARNA17.2-201ENST00000516334 143 ntBASIC3.08□□□□□ -1.92
CTCFP49711 HSPE1P20-201ENST00000538133 289 ntBASIC3.08□□□□□ -1.92
CTCFP49711 HIF1AP1-201ENST00000553642 175 ntBASIC3.08□□□□□ -1.92
CTCFP49711 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.08□□□□□ -1.92
CTCFP49711 AC025678.1-201ENST00000567861 338 ntBASIC3.08□□□□□ -1.92
CTCFP49711 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.08□□□□□ -1.92
CTCFP49711 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.08□□□□□ -1.92
CTCFP49711 AC073539.2-201ENST00000597113 165 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms