Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL031183.1-201ENST00000457667 207 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AC002456.2-201ENST00000509356 380 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 RNU6-559P-201ENST00000516151 98 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 RNU6-581P-201ENST00000516214 105 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AC069113.1-201ENST00000517763 267 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HOXA1P49639 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.63□□□□□ -1.99
HOXA1P49639 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HOXA1P49639 AC106785.1-201ENST00000565935 262 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXA1P49639 AC008121.1-201ENST00000603244 268 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AL050343.2-201ENST00000607338 280 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AL157817.1-201ENST00000614264 790 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AC010378.1-201ENST00000619270 362 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 AC006111.3-201ENST00000622137 383 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 Z69720.2-201ENST00000624755 279 ntBASIC2.63□□□□□ -1.99
HOXA1P49639 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXA1P49639 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXA1P49639 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HOXA1P49639 RNU4-35P-201ENST00000362588 141 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 Y_RNA.151-201ENST00000363566 112 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 SNORA14A-201ENST00000364773 135 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 RNU6-827P-201ENST00000365553 106 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 RNU6-1329P-201ENST00000365664 107 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 RNU6-198P-201ENST00000384258 104 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 MIR518D-201ENST00000385014 87 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 FO393413.1-201ENST00000402892 195 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 AL590004.2-201ENST00000404787 371 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 MIR1289-1-201ENST00000408836 144 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 RNU6-370P-201ENST00000411008 104 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 RPL37P10-201ENST00000412884 288 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 AC074085.1-201ENST00000413598 418 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 RPL26P27-201ENST00000414397 437 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXA1P49639 AC006946.1-201ENST00000429106 328 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXA1P49639 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXA1P49639 AL133547.1-201ENST00000448546 220 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 RPL37P4-201ENST00000448908 268 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXA1P49639 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.62□□□□□ -1.99
HOXA1P49639 SNORA31.1-201ENST00000515993 133 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 SNORA31.5-201ENST00000516190 133 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 SNORA31.15-201ENST00000516771 132 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.62□□□□□ -1.99
HOXA1P49639 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXA1P49639 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXA1P49639 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXA1P49639 AC005476.1-201ENST00000554427 397 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 AC103996.1-201ENST00000555468 102 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 AC007151.1-201ENST00000572774 483 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 AL451007.1-201ENST00000595491 289 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.62□□□□□ -1.99
HOXA1P49639 AL162713.1-201ENST00000604480 262 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 AC113139.1-201ENST00000605049 239 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXA1P49639 AL161629.2-201ENST00000615347 275 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXA1P49639 AC097372.5-201ENST00000623665 376 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 FO624990.1-201ENST00000636373 85 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXA1P49639 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA1P49639 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXA1P49639 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXA1P49639 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
HOXA1P49639 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
HOXA1P49639 AL161431.1-201ENST00000618966 4205 ntBASIC2.62□□□□□ -1.99
HOXA1P49639 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.62□□□□□ -1.99
HOXA1P49639 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA1P49639 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.62□□□□□ -1.99
HOXA1P49639 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA1P49639 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
HOXA1P49639 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
HOXA1P49639 RNU6-1059P-201ENST00000363752 98 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 RNU6-214P-201ENST00000384130 107 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 RNU6-72P-201ENST00000384285 79 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 SNORD116-29-201ENST00000384516 83 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
HOXA1P49639 SNORD17-201ENST00000390930 237 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 PTMAP2-201ENST00000397627 327 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 RN7SKP158-201ENST00000410453 326 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXA1P49639 AL445584.1-201ENST00000431451 330 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXA1P49639 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXA1P49639 MTATP6P7-201ENST00000453315 681 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 MTCO1P29-201ENST00000496868 288 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXA1P49639 AC096745.1-201ENST00000509945 370 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 AC113155.1-201ENST00000511141 769 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.61□□□□□ -1.99
HOXA1P49639 RNU1-95P-201ENST00000516357 160 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 RNU1-128P-201ENST00000516704 160 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.61□□□□□ -1.99
HOXA1P49639 APOOP3-201ENST00000536787 586 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 ELOCP31-201ENST00000540463 467 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXA1P49639 MIR4276-201ENST00000584832 70 ntBASIC2.61□□□□□ -1.99
HOXA1P49639 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 159.9 ms