Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MTCO1P44-201ENST00000441935 243 ntBASIC0.37□□□□□ -2.35
CUX1P39880 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC0.37□□□□□ -2.35
CUX1P39880 SUMO1P1-201ENST00000497904 306 ntBASIC0.37□□□□□ -2.35
CUX1P39880 NRON-201ENST00000517270 370 ntBASIC0.37□□□□□ -2.35
CUX1P39880 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.37□□□□□ -2.35
CUX1P39880 MIR3937-201ENST00000580135 106 ntBASIC0.37□□□□□ -2.35
CUX1P39880 AL031176.1-201ENST00000604554 466 ntBASIC0.37□□□□□ -2.35
CUX1P39880 BX284668.6-201ENST00000606899 438 ntBASIC0.37□□□□□ -2.35
CUX1P39880 AP005229.2-201ENST00000609980 697 ntBASIC0.37□□□□□ -2.35
CUX1P39880 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.37□□□□□ -2.35
CUX1P39880 U6.107-201ENST00000637108 79 ntBASIC0.37□□□□□ -2.35
CUX1P39880 SNORD33-201ENST00000362761 85 ntBASIC0.36□□□□□ -2.35
CUX1P39880 RNU6-414P-201ENST00000363705 104 ntBASIC0.36□□□□□ -2.35
CUX1P39880 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC0.36□□□□□ -2.35
CUX1P39880 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC0.36□□□□□ -2.35
CUX1P39880 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.36□□□□□ -2.35
CUX1P39880 AL353691.1-201ENST00000451332 387 ntBASIC0.36□□□□□ -2.35
CUX1P39880 AC087477.1-201ENST00000465747 340 ntBASIC0.36□□□□□ -2.35
CUX1P39880 RPL21P47-201ENST00000483696 477 ntBASIC0.36□□□□□ -2.35
CUX1P39880 AC025459.1-201ENST00000504072 156 ntBASIC0.36□□□□□ -2.35
CUX1P39880 SCARNA15.2-201ENST00000516409 127 ntBASIC0.36□□□□□ -2.35
CUX1P39880 SNORD116-30-201ENST00000516468 85 ntBASIC0.36□□□□□ -2.35
CUX1P39880 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.36□□□□□ -2.35
CUX1P39880 CR383656.7-201ENST00000548164 174 ntBASIC0.36□□□□□ -2.35
CUX1P39880 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.36□□□□□ -2.35
CUX1P39880 BNIP3P16-201ENST00000589779 534 ntBASIC0.36□□□□□ -2.35
CUX1P39880 MTCO2P2-201ENST00000591258 225 ntBASIC0.36□□□□□ -2.35
CUX1P39880 BBIP1P1-201ENST00000602999 279 ntBASIC0.36□□□□□ -2.35
CUX1P39880 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.36□□□□□ -2.35
CUX1P39880 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC0.36□□□□□ -2.35
CUX1P39880 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.35□□□□□ -2.35
CUX1P39880 MIR409-201ENST00000362237 79 ntBASIC0.35□□□□□ -2.35
CUX1P39880 SNORD51-201ENST00000384320 80 ntBASIC0.35□□□□□ -2.35
CUX1P39880 SNORA25-201ENST00000384384 134 ntBASIC0.35□□□□□ -2.35
CUX1P39880 RNU6-45P-201ENST00000384471 107 ntBASIC0.35□□□□□ -2.35
CUX1P39880 MIR514A1-201ENST00000385133 98 ntBASIC0.35□□□□□ -2.35
CUX1P39880 AC027119.1-201ENST00000440877 241 ntBASIC0.35□□□□□ -2.35
CUX1P39880 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.35□□□□□ -2.35
CUX1P39880 AC245102.2-201ENST00000448956 180 ntBASIC0.35□□□□□ -2.35
CUX1P39880 RPL36AP48-201ENST00000485521 314 ntBASIC0.35□□□□□ -2.35
CUX1P39880 SNORA31.17-201ENST00000516953 127 ntBASIC0.35□□□□□ -2.35
CUX1P39880 SNORD19.2-201ENST00000516978 73 ntBASIC0.35□□□□□ -2.35
CUX1P39880 CYCSP27-201ENST00000527643 293 ntBASIC0.35□□□□□ -2.35
CUX1P39880 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC0.35□□□□□ -2.35
CUX1P39880 LSM6P2-201ENST00000552208 177 ntBASIC0.35□□□□□ -2.35
CUX1P39880 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.35□□□□□ -2.35
CUX1P39880 MIR4305-201ENST00000583252 102 ntBASIC0.35□□□□□ -2.35
CUX1P39880 AC112220.3-201ENST00000605502 502 ntBASIC0.35□□□□□ -2.35
CUX1P39880 AL022345.2-201ENST00000606307 135 ntBASIC0.35□□□□□ -2.35
CUX1P39880 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.35□□□□□ -2.35
CUX1P39880 AC016542.1-201ENST00000608259 493 ntBASIC0.35□□□□□ -2.35
CUX1P39880 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.35□□□□□ -2.35
CUX1P39880 AL138713.1-201ENST00000624026 2130 ntBASIC0.35□□□□□ -2.35
CUX1P39880 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.34□□□□□ -2.35
CUX1P39880 RNU1-58P-201ENST00000362413 163 ntBASIC0.34□□□□□ -2.35
CUX1P39880 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.34□□□□□ -2.35
CUX1P39880 RNU6-43P-201ENST00000384302 107 ntBASIC0.34□□□□□ -2.35
CUX1P39880 AC098831.1-201ENST00000440661 216 ntBASIC0.34□□□□□ -2.35
CUX1P39880 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.34□□□□□ -2.35
CUX1P39880 AC067940.1-201ENST00000458411 300 ntBASIC0.34□□□□□ -2.35
CUX1P39880 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.34□□□□□ -2.35
CUX1P39880 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC0.34□□□□□ -2.35
CUX1P39880 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC0.34□□□□□ -2.35
CUX1P39880 AC008088.1-201ENST00000580993 280 ntBASIC0.34□□□□□ -2.35
CUX1P39880 AC027335.2-201ENST00000624030 375 ntBASIC0.34□□□□□ -2.35
CUX1P39880 AC092125.1-201ENST00000562568 1995 ntBASIC0.33□□□□□ -2.36
CUX1P39880 RNU6-1151P-201ENST00000384684 107 ntBASIC0.33□□□□□ -2.36
CUX1P39880 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.33□□□□□ -2.36
CUX1P39880 AC132479.1-201ENST00000449160 144 ntBASIC0.33□□□□□ -2.36
CUX1P39880 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.33□□□□□ -2.36
CUX1P39880 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC0.33□□□□□ -2.36
CUX1P39880 AP003066.2-201ENST00000529375 555 ntBASIC0.33□□□□□ -2.36
CUX1P39880 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC0.33□□□□□ -2.36
CUX1P39880 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC0.33□□□□□ -2.36
CUX1P39880 AC090079.2-201ENST00000575289 768 ntBASIC0.33□□□□□ -2.36
CUX1P39880 MIR3167-201ENST00000579623 85 ntBASIC0.33□□□□□ -2.36
CUX1P39880 AC068620.3-201ENST00000602749 560 ntBASIC0.33□□□□□ -2.36
CUX1P39880 AC009318.4-201ENST00000620496 486 ntBASIC0.33□□□□□ -2.36
CUX1P39880 MTCYBP32-201ENST00000427945 1084 ntBASIC0.33□□□□□ -2.36
CUX1P39880 NANOGP2-201ENST00000435391 727 ntBASIC0.33□□□□□ -2.36
CUX1P39880 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC0.33□□□□□ -2.36
CUX1P39880 RPL31P3-201ENST00000458430 332 ntBASIC0.33□□□□□ -2.36
CUX1P39880 AP001324.2-201ENST00000461163 319 ntBASIC0.33□□□□□ -2.36
CUX1P39880 AC118282.2-201ENST00000508739 374 ntBASIC0.33□□□□□ -2.36
CUX1P39880 COPS8P3-201ENST00000526024 482 ntBASIC0.33□□□□□ -2.36
CUX1P39880 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.32□□□□□ -2.36
CUX1P39880 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
CUX1P39880 MIR1262-201ENST00000408276 93 ntBASIC0.32□□□□□ -2.36
CUX1P39880 AL392003.1-201ENST00000434394 243 ntBASIC0.32□□□□□ -2.36
CUX1P39880 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.32□□□□□ -2.36
CUX1P39880 HMGN1P13-201ENST00000505795 138 ntBASIC0.32□□□□□ -2.36
CUX1P39880 RNU4-54P-201ENST00000516428 129 ntBASIC0.32□□□□□ -2.36
CUX1P39880 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC0.32□□□□□ -2.36
CUX1P39880 AC012557.2-201ENST00000605919 418 ntBASIC0.32□□□□□ -2.36
CUX1P39880 GDI2P1-201ENST00000429312 1336 ntBASIC0.31□□□□□ -2.36
CUX1P39880 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0.31□□□□□ -2.36
CUX1P39880 RNU6-741P-201ENST00000383889 107 ntBASIC0.31□□□□□ -2.36
CUX1P39880 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.31□□□□□ -2.36
CUX1P39880 AC139712.2-201ENST00000424302 339 ntBASIC0.31□□□□□ -2.36
CUX1P39880 RPP40P1-201ENST00000426762 456 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms