Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC018437.1-201ENST00000492214 406 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.69□□□□□ -2.14
BRCA1P38398 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 RNU6-678P-201ENST00000516832 109 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 AC023050.2-201ENST00000544968 387 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.69□□□□□ -2.14
BRCA1P38398 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.69□□□□□ -2.14
BRCA1P38398 AL138963.2-201ENST00000605137 226 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 AC080013.3-201ENST00000606839 578 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 SDR42E1P4-201ENST00000620894 481 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.69□□□□□ -2.14
BRCA1P38398 SNORD115.1-201ENST00000391109 76 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.69□□□□□ -2.14
BRCA1P38398 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.69□□□□□ -2.14
BRCA1P38398 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
BRCA1P38398 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC1.69□□□□□ -2.14
BRCA1P38398 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC1.69□□□□□ -2.14
BRCA1P38398 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC1.69□□□□□ -2.14
BRCA1P38398 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.69□□□□□ -2.14
BRCA1P38398 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.69□□□□□ -2.14
BRCA1P38398 RNU6-953P-201ENST00000459154 107 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 DYNLL1P5-201ENST00000467158 270 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
BRCA1P38398 RNU6-1315P-201ENST00000517187 99 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.69□□□□□ -2.14
BRCA1P38398 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
BRCA1P38398 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC1.69□□□□□ -2.14
BRCA1P38398 AGGF1P5-201ENST00000567900 919 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.69□□□□□ -2.14
BRCA1P38398 AL161798.1-201ENST00000604630 131 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.69□□□□□ -2.14
BRCA1P38398 U6.99-201ENST00000637524 83 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 MTND5P42-201ENST00000637720 498 ntBASIC1.69□□□□□ -2.14
BRCA1P38398 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
BRCA1P38398 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
BRCA1P38398 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.68□□□□□ -2.14
BRCA1P38398 RNU4-68P-201ENST00000364314 141 ntBASIC1.68□□□□□ -2.14
BRCA1P38398 RPS20P2-201ENST00000402520 389 ntBASIC1.68□□□□□ -2.14
BRCA1P38398 XKRYP1-201ENST00000423438 492 ntBASIC1.68□□□□□ -2.14
BRCA1P38398 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC1.68□□□□□ -2.14
BRCA1P38398 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.68□□□□□ -2.14
BRCA1P38398 XKRYP2-201ENST00000432915 492 ntBASIC1.68□□□□□ -2.14
BRCA1P38398 AL353689.1-201ENST00000438895 199 ntBASIC1.68□□□□□ -2.14
BRCA1P38398 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC1.68□□□□□ -2.14
BRCA1P38398 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.68□□□□□ -2.14
BRCA1P38398 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.68□□□□□ -2.14
BRCA1P38398 AC139453.3-201ENST00000493276 369 ntBASIC1.68□□□□□ -2.14
BRCA1P38398 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.68□□□□□ -2.14
BRCA1P38398 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC1.68□□□□□ -2.14
BRCA1P38398 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.68□□□□□ -2.14
BRCA1P38398 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.68□□□□□ -2.14
BRCA1P38398 AP001981.2-201ENST00000603241 418 ntBASIC1.68□□□□□ -2.14
BRCA1P38398 AL355598.1-201ENST00000604169 202 ntBASIC1.68□□□□□ -2.14
BRCA1P38398 AL022154.1-201ENST00000604698 785 ntBASIC1.68□□□□□ -2.14
BRCA1P38398 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.68□□□□□ -2.14
BRCA1P38398 AC130324.3-201ENST00000614165 542 ntBASIC1.68□□□□□ -2.14
BRCA1P38398 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.68□□□□□ -2.14
BRCA1P38398 AC099654.9-201ENST00000637055 678 ntBASIC1.68□□□□□ -2.14
BRCA1P38398 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
BRCA1P38398 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
BRCA1P38398 RNU6-622P-201ENST00000384272 103 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 RNU6-1242P-201ENST00000391052 103 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 RPS12P24-201ENST00000412619 387 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 RSU1P2-202ENST00000437884 485 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 IPO7P1-201ENST00000442031 636 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
BRCA1P38398 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1.67□□□□□ -2.14
BRCA1P38398 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC1.67□□□□□ -2.14
BRCA1P38398 FAM106DP-201ENST00000586416 501 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 AC009233.1-201ENST00000616477 371 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.67□□□□□ -2.14
BRCA1P38398 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.67□□□□□ -2.14
BRCA1P38398 AL391994.1-201ENST00000254724 282 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 RNU1-72P-201ENST00000362976 153 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 RNU6-486P-201ENST00000363116 107 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 RNU6-960P-201ENST00000364056 120 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 RNU4-41P-201ENST00000364426 143 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 RNU4-28P-201ENST00000364739 141 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 Y_RNA.374-201ENST00000365606 101 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.67□□□□□ -2.14
BRCA1P38398 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC1.67□□□□□ -2.14
BRCA1P38398 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.67□□□□□ -2.14
BRCA1P38398 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.67□□□□□ -2.14
BRCA1P38398 MRPS17P9-201ENST00000511924 393 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 SMURF2P1-201ENST00000514992 481 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC1.67□□□□□ -2.14
BRCA1P38398 AP005660.1-201ENST00000522972 293 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.67□□□□□ -2.14
BRCA1P38398 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC1.67□□□□□ -2.14
BRCA1P38398 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.67□□□□□ -2.14
BRCA1P38398 AC022893.3-201ENST00000607665 437 ntBASIC1.67□□□□□ -2.14
BRCA1P38398 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
BRCA1P38398 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
BRCA1P38398 Y_RNA.36-201ENST00000362602 112 ntBASIC1.66□□□□□ -2.14
BRCA1P38398 RNU6-188P-201ENST00000364207 107 ntBASIC1.66□□□□□ -2.14
BRCA1P38398 RNU6-946P-201ENST00000383878 107 ntBASIC1.66□□□□□ -2.14
BRCA1P38398 MIR147B-201ENST00000390185 80 ntBASIC1.66□□□□□ -2.14
BRCA1P38398 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC1.66□□□□□ -2.14
BRCA1P38398 AC138623.1-201ENST00000418060 216 ntBASIC1.66□□□□□ -2.14
BRCA1P38398 AL354941.1-201ENST00000438600 464 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms