Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MIR1302-8-201ENST00000408342 128 ntBASIC0.06□□□□□ -2.4
HMGA1P17096 MIR1295A-201ENST00000408463 79 ntBASIC0.06□□□□□ -2.4
HMGA1P17096 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC0.06□□□□□ -2.4
HMGA1P17096 GTF2IP13-201ENST00000438487 386 ntBASIC0.06□□□□□ -2.4
HMGA1P17096 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.06□□□□□ -2.4
HMGA1P17096 RNA5SP168-201ENST00000516642 112 ntBASIC0.06□□□□□ -2.4
HMGA1P17096 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC0.06□□□□□ -2.4
HMGA1P17096 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.06□□□□□ -2.4
HMGA1P17096 AC025423.5-201ENST00000550230 219 ntBASIC0.06□□□□□ -2.4
HMGA1P17096 MIR5190-201ENST00000581537 80 ntBASIC0.06□□□□□ -2.4
HMGA1P17096 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.05□□□□□ -2.4
HMGA1P17096 RNU6-140P-201ENST00000384566 108 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 MIR200A-201ENST00000384875 90 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
HMGA1P17096 AL161935.2-201ENST00000414627 60 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC0.05□□□□□ -2.4
HMGA1P17096 FTH1P12-201ENST00000432137 551 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 MTCO3P5-201ENST00000433620 714 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 GAPDHP17-201ENST00000449858 1001 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.05□□□□□ -2.4
HMGA1P17096 AC010631.1-201ENST00000474150 156 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 SNORA68.3-201ENST00000515906 83 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 RNA5SP291-201ENST00000517222 105 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 AL132857.1-201ENST00000555180 708 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.05□□□□□ -2.4
HMGA1P17096 AC022432.1-201ENST00000595739 310 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 BNIP3P23-201ENST00000599655 511 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 AC068790.6-201ENST00000602558 258 ntBASIC0.05□□□□□ -2.4
HMGA1P17096 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.05□□□□□ -2.4
HMGA1P17096 U3.9-201ENST00000363823 204 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 RNU6-441P-201ENST00000384545 106 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 AL356776.1-201ENST00000406574 447 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 HSPE1P9-201ENST00000440046 311 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC0.04□□□□□ -2.4
HMGA1P17096 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.04□□□□□ -2.4
HMGA1P17096 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC0.04□□□□□ -2.4
HMGA1P17096 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC0.04□□□□□ -2.4
HMGA1P17096 RNU11-2P-201ENST00000516898 142 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 SNORA70.22-201ENST00000517160 124 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC0.04□□□□□ -2.4
HMGA1P17096 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC0.04□□□□□ -2.4
HMGA1P17096 NACAP3-201ENST00000552100 481 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC0.04□□□□□ -2.4
HMGA1P17096 AL365434.2-201ENST00000607979 234 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 Z82243.1-201ENST00000609432 473 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 FTX_3.1-201ENST00000610451 147 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 AL132822.1-201ENST00000617063 513 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 AP003072.5-201ENST00000623872 773 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 AC017037.3-201ENST00000625016 472 ntBASIC0.04□□□□□ -2.4
HMGA1P17096 AC090625.1-201ENST00000357130 210 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 Y_RNA.124-201ENST00000363339 93 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 MIR135A2-201ENST00000384854 100 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 MIR942-201ENST00000401111 86 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC0.03□□□□□ -2.4
HMGA1P17096 SNX2P2-201ENST00000424553 323 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 MTCYBP32-201ENST00000427945 1084 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 OR2AQ1P-201ENST00000451972 200 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 MTND2P24-201ENST00000453434 806 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 RPL26P26-201ENST00000480251 434 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC0.03□□□□□ -2.4
HMGA1P17096 RNA5SP503-201ENST00000517047 117 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGA1P17096 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGA1P17096 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.03□□□□□ -2.4
HMGA1P17096 AC136619.2-201ENST00000563361 631 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 MIR4667-201ENST00000578933 66 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 AC016542.1-201ENST00000608259 493 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 AP001596.2-201ENST00000608410 312 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 AC093913.1-201ENST00000614178 329 ntBASIC0.03□□□□□ -2.4
HMGA1P17096 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.03□□□□□ -2.4
HMGA1P17096 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC0.03□□□□□ -2.4
HMGA1P17096 AL391994.1-201ENST00000254724 282 ntBASIC0.02□□□□□ -2.41
HMGA1P17096 MIR514A1-201ENST00000385133 98 ntBASIC0.02□□□□□ -2.41
HMGA1P17096 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
HMGA1P17096 RNU2-43P-201ENST00000410306 190 ntBASIC0.02□□□□□ -2.41
HMGA1P17096 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC0.02□□□□□ -2.41
HMGA1P17096 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.02□□□□□ -2.41
HMGA1P17096 AP003392.2-201ENST00000527269 208 ntBASIC0.02□□□□□ -2.41
HMGA1P17096 AC023158.1-201ENST00000561632 1025 ntBASIC0.02□□□□□ -2.41
HMGA1P17096 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC0.02□□□□□ -2.41
HMGA1P17096 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC0.02□□□□□ -2.41
HMGA1P17096 AL671309.1-201ENST00000603750 544 ntBASIC0.02□□□□□ -2.41
HMGA1P17096 AC069114.2-201ENST00000604699 304 ntBASIC0.02□□□□□ -2.41
HMGA1P17096 AC105129.3-201ENST00000605455 485 ntBASIC0.02□□□□□ -2.41
HMGA1P17096 AL109620.1-201ENST00000618738 1197 ntBASIC0.02□□□□□ -2.41
HMGA1P17096 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.02□□□□□ -2.41
HMGA1P17096 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC0.01□□□□□ -2.41
HMGA1P17096 Y_RNA.255-201ENST00000364581 97 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 Y_RNA.374-201ENST00000365606 101 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 RNU1-119P-201ENST00000391122 165 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 NDUFS5P4-201ENST00000412983 318 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.01□□□□□ -2.41
HMGA1P17096 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC0.01□□□□□ -2.41
HMGA1P17096 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.01□□□□□ -2.41
HMGA1P17096 AL669831.1-202ENST00000428504 417 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC0.01□□□□□ -2.41
HMGA1P17096 RPL36AP48-201ENST00000485521 314 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 LRRC34P2-201ENST00000514850 553 ntBASIC0.01□□□□□ -2.41
HMGA1P17096 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms