Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A1P12109 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4□□□□□ -1.77
COL6A1P12109 RNU6-596P-201ENST00000365395 98 ntBASIC4□□□□□ -1.77
COL6A1P12109 RNU6-713P-201ENST00000384761 107 ntBASIC4□□□□□ -1.77
COL6A1P12109 AL445529.1-201ENST00000398713 389 ntBASIC4□□□□□ -1.77
COL6A1P12109 HLFP1-201ENST00000402375 499 ntBASIC4□□□□□ -1.77
COL6A1P12109 AC063979.1-201ENST00000415539 377 ntBASIC4□□□□□ -1.77
COL6A1P12109 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4□□□□□ -1.77
COL6A1P12109 MRPS18CP6-201ENST00000423587 223 ntBASIC4□□□□□ -1.77
COL6A1P12109 AL133396.1-201ENST00000432048 687 ntBASIC4□□□□□ -1.77
COL6A1P12109 RPL26P6-201ENST00000440913 438 ntBASIC4□□□□□ -1.77
COL6A1P12109 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4□□□□□ -1.77
COL6A1P12109 AL353752.1-201ENST00000454946 260 ntBASIC4□□□□□ -1.77
COL6A1P12109 HSPE1P6-201ENST00000479457 291 ntBASIC4□□□□□ -1.77
COL6A1P12109 RPL17P19-201ENST00000489069 552 ntBASIC4□□□□□ -1.77
COL6A1P12109 AL049874.1-201ENST00000489560 388 ntBASIC4□□□□□ -1.77
COL6A1P12109 AC104564.1-201ENST00000493028 407 ntBASIC4□□□□□ -1.77
COL6A1P12109 RPL22P13-201ENST00000493291 347 ntBASIC4□□□□□ -1.77
COL6A1P12109 MTND3P25-201ENST00000509243 135 ntBASIC4□□□□□ -1.77
COL6A1P12109 Y_RNA.668-201ENST00000516233 93 ntBASIC4□□□□□ -1.77
COL6A1P12109 RNY3P15-201ENST00000516297 97 ntBASIC4□□□□□ -1.77
COL6A1P12109 RNU6-143P-201ENST00000516942 93 ntBASIC4□□□□□ -1.77
COL6A1P12109 AP005902.1-201ENST00000521358 186 ntBASIC4□□□□□ -1.77
COL6A1P12109 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC4□□□□□ -1.77
COL6A1P12109 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4□□□□□ -1.77
COL6A1P12109 MIR5004-201ENST00000579078 107 ntBASIC4□□□□□ -1.77
COL6A1P12109 LRRC37A5P-203ENST00000580181 585 ntBASIC4□□□□□ -1.77
COL6A1P12109 SNORD58B-201ENST00000607313 66 ntBASIC4□□□□□ -1.77
COL6A1P12109 AC062037.2-201ENST00000610137 73 ntBASIC4□□□□□ -1.77
COL6A1P12109 AL591516.1-201ENST00000611326 274 ntBASIC4□□□□□ -1.77
COL6A1P12109 AL021879.1-201ENST00000611756 288 ntBASIC4□□□□□ -1.77
COL6A1P12109 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL6A1P12109 AC034102.8-201ENST00000615146 484 ntBASIC4□□□□□ -1.77
COL6A1P12109 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4□□□□□ -1.77
COL6A1P12109 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL6A1P12109 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A1P12109 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4□□□□□ -1.77
COL6A1P12109 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A1P12109 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL6A1P12109 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4□□□□□ -1.77
COL6A1P12109 FAM35DP-201ENST00000323387 2712 ntBASIC4□□□□□ -1.77
COL6A1P12109 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL6A1P12109 AC110774.1-201ENST00000623567 2018 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 RNU6-379P-201ENST00000363813 104 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 SNORD14.1-201ENST00000365609 90 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 Y_RNA.485-201ENST00000384395 102 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 MIR578-201ENST00000384828 96 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 Z98941.1-201ENST00000407764 100 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 RNU6-607P-201ENST00000411283 108 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 RPL21P40-201ENST00000428586 483 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.99□□□□□ -1.77
COL6A1P12109 OSTCP8-201ENST00000445117 448 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 AL360271.2-201ENST00000447710 161 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.99□□□□□ -1.77
COL6A1P12109 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.99□□□□□ -1.77
COL6A1P12109 AC069499.1-201ENST00000489433 509 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 AC114801.2-201ENST00000503825 781 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 AC008716.1-201ENST00000511084 513 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 ACA59.1-201ENST00000515966 143 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 AC131281.1-201ENST00000522984 164 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.99□□□□□ -1.77
COL6A1P12109 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.99□□□□□ -1.77
COL6A1P12109 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.99□□□□□ -1.77
COL6A1P12109 AC005951.2-201ENST00000576282 495 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 MIR5680-201ENST00000577577 84 ntBASIC3.99□□□□□ -1.77
COL6A1P12109 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL6A1P12109 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL6A1P12109 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL6A1P12109 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.99□□□□□ -1.77
COL6A1P12109 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL6A1P12109 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.98□□□□□ -1.77
COL6A1P12109 SNORA80A-201ENST00000363922 136 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 RNU6-933P-201ENST00000384424 107 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 Y_RNA.534-201ENST00000384599 112 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 Y_RNA.577-201ENST00000384794 101 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL6A1P12109 MIR1252-201ENST00000408861 65 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 AL030996.1-201ENST00000411430 235 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 AL356968.1-201ENST00000416622 474 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.98□□□□□ -1.77
COL6A1P12109 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.98□□□□□ -1.77
COL6A1P12109 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.98□□□□□ -1.77
COL6A1P12109 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.98□□□□□ -1.77
COL6A1P12109 AC006445.2-201ENST00000510061 472 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 RNU6-927P-201ENST00000516199 100 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.98□□□□□ -1.77
COL6A1P12109 AC008011.1-201ENST00000545989 227 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.98□□□□□ -1.77
COL6A1P12109 MIR4273-201ENST00000582824 84 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.98□□□□□ -1.77
COL6A1P12109 AC107294.1-201ENST00000609524 467 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 AC107871.2-201ENST00000612894 502 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 AL138880.2-201ENST00000616214 239 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 AC092628.2-201ENST00000622492 339 ntBASIC3.98□□□□□ -1.77
COL6A1P12109 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.98□□□□□ -1.77
COL6A1P12109 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.98□□□□□ -1.77
COL6A1P12109 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL6A1P12109 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL6A1P12109 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL6A1P12109 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms