Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.5□□□□□ -1.85
COL3A1P02461 AL512605.2-201ENST00000592972 256 ntBASIC3.5□□□□□ -1.85
COL3A1P02461 AC104695.3-201ENST00000604052 296 ntBASIC3.5□□□□□ -1.85
COL3A1P02461 AL138726.1-201ENST00000614873 333 ntBASIC3.5□□□□□ -1.85
COL3A1P02461 FAM157A-202ENST00000615155 405 ntBASIC3.5□□□□□ -1.85
COL3A1P02461 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
COL3A1P02461 MTND5P28-201ENST00000438005 1594 ntBASIC3.5□□□□□ -1.85
COL3A1P02461 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL3A1P02461 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.5□□□□□ -1.85
COL3A1P02461 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL3A1P02461 RNU6-562P-201ENST00000362731 107 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 Y_RNA.576-201ENST00000384781 102 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 MIR3074-201ENST00000384885 81 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 Y_RNA.645-201ENST00000391229 102 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 SNORA75.6-201ENST00000391318 127 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 RNU6-387P-201ENST00000411331 105 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.49□□□□□ -1.85
COL3A1P02461 AC002553.2-201ENST00000453217 340 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 SNORD121B-201ENST00000458838 81 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 SCARNA18-201ENST00000459004 134 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 AC116337.1-201ENST00000509680 687 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 Y_RNA.668-201ENST00000516233 93 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 SNORD116.3-201ENST00000517176 78 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 RNU1-54P-201ENST00000517181 120 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 MIR5583-1-201ENST00000580941 59 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 AC138627.2-201ENST00000624202 601 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 AL445437.1-201ENST00000623157 3087 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 MTND5P27-201ENST00000428871 1720 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 TPTE2P4-201ENST00000258589 1605 ntBASIC3.49□□□□□ -1.85
COL3A1P02461 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.48□□□□□ -1.85
COL3A1P02461 RNU1-115P-201ENST00000365329 160 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 RNU6-61P-201ENST00000365528 109 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 RNU5E-6P-201ENST00000365574 115 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 RNU6-26P-201ENST00000383985 107 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 RNU6-209P-201ENST00000384118 107 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 RNU6-1226P-201ENST00000384317 107 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 AL136372.1-201ENST00000403060 228 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 RNU6-1050P-201ENST00000410388 107 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 AC069218.2-201ENST00000411665 344 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL3A1P02461 CALM2P2-201ENST00000428512 440 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 AC244505.4-201ENST00000434905 287 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 MTCO3P45-201ENST00000443036 613 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 SSXP5-201ENST00000443473 287 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.48□□□□□ -1.85
COL3A1P02461 GSTA11P-201ENST00000452866 669 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.48□□□□□ -1.85
COL3A1P02461 RNU6-1218P-201ENST00000458990 108 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 SNORD97-201ENST00000459187 142 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 TRBV1-201ENST00000476502 284 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 RNU6-1143P-201ENST00000516125 104 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.48□□□□□ -1.85
COL3A1P02461 AC103783.1-201ENST00000520506 373 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.48□□□□□ -1.85
COL3A1P02461 AC024619.4-201ENST00000580924 316 ntBASIC3.48□□□□□ -1.85
COL3A1P02461 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL3A1P02461 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.48□□□□□ -1.85
COL3A1P02461 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.48□□□□□ -1.85
COL3A1P02461 RNU6-960P-201ENST00000364056 120 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 Y_RNA.424-201ENST00000384063 103 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 SNORA24.1-201ENST00000384401 135 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
COL3A1P02461 NDUFS5P1-201ENST00000405668 289 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.47□□□□□ -1.85
COL3A1P02461 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.47□□□□□ -1.85
COL3A1P02461 RPL21P93-201ENST00000480465 489 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AC103975.1-201ENST00000482506 483 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 RPL22P13-201ENST00000493291 347 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 RNU6-408P-201ENST00000515910 100 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AF186190.1-201ENST00000517470 480 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.47□□□□□ -1.85
COL3A1P02461 AC009229.3-201ENST00000608056 282 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 DUSP12P1-201ENST00000612874 516 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AC093010.3-201ENST00000570269 15214 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.47□□□□□ -1.85
COL3A1P02461 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
COL3A1P02461 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.47□□□□□ -1.85
COL3A1P02461 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL3A1P02461 Y_RNA.380-201ENST00000365663 111 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 RNU6-128P-201ENST00000383976 107 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 RNA5SP219-201ENST00000390940 113 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 RNA5SP129-201ENST00000410276 118 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.47□□□□□ -1.85
COL3A1P02461 PCNPP5-201ENST00000452246 481 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 RNU7-170P-201ENST00000459303 61 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AC008571.1-201ENST00000467232 300 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 HMGB1P25-201ENST00000468402 607 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.47□□□□□ -1.85
COL3A1P02461 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.47□□□□□ -1.85
COL3A1P02461 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.47□□□□□ -1.85
COL3A1P02461 AC067852.4-201ENST00000590314 478 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.47□□□□□ -1.85
COL3A1P02461 AL590099.1-201ENST00000615276 138 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 MIR6817-201ENST00000615588 66 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 AC078938.1-201ENST00000620993 318 ntBASIC3.47□□□□□ -1.85
COL3A1P02461 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL3A1P02461 MAPK10-322ENST00000641485 4530 ntBASIC3.46□□□□□ -1.86
COL3A1P02461 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms