Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
COL17A1Q9UMD9 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AL391987.6-201ENST00000305671 199 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 MIR411-201ENST00000362239 96 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 Y_RNA.2-201ENST00000362330 96 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 RNU6-562P-201ENST00000362731 107 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 RNU6-283P-201ENST00000364788 107 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 Y_RNA.352-201ENST00000365439 102 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 SNORA7.4-201ENST00000384249 137 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 MIR450B-201ENST00000401182 78 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 RNU6-1203P-201ENST00000410703 110 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AC004552.1-201ENST00000419089 348 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 RPS12P5-201ENST00000423449 371 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 HIGD1AP11-201ENST00000438361 280 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 FCF1P4-201ENST00000448326 183 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 RPS15AP27-201ENST00000449183 343 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AL513124.1-201ENST00000450410 614 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 RPL21P104-201ENST00000464143 478 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 RPS26P3-201ENST00000470205 348 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AC090543.2-201ENST00000483963 348 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AC004057.1-201ENST00000485827 348 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 RPL23AP55-201ENST00000498163 452 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AKIRIN2P1-201ENST00000505898 352 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 PDCD5P2-201ENST00000507570 312 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 SNORA40.14-201ENST00000516543 86 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 RNU1-54P-201ENST00000517181 120 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AC004584.2-201ENST00000570407 410 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AL162713.1-201ENST00000604480 262 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 BX284668.6-201ENST00000606899 438 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AC104465.1-201ENST00000611365 139 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AC005520.5-201ENST00000613926 164 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AC087190.4-201ENST00000574616 8334 ntBASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC5.03□□□□□ -1.6
COL17A1Q9UMD9 AC090740.1-201ENST00000623193 2262 ntBASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 Y_RNA.84-201ENST00000363011 104 ntBASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 RNU5E-6P-201ENST00000365574 115 ntBASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 RNU2-21P-201ENST00000410368 188 ntBASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 RNA5SP107-201ENST00000411358 122 ntBASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 NDUFB4P10-201ENST00000452541 359 ntBASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 AC084357.1-201ENST00000473404 255 ntBASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 AL121576.1-201ENST00000556055 276 ntBASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 MIR3144-201ENST00000579460 79 ntBASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 MIR4524B-201ENST00000581569 115 ntBASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 NCAPGP1-201ENST00000505112 1814 ntBASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL17A1Q9UMD9 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 RNU6-960P-201ENST00000364056 120 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 RNA5SP42-201ENST00000364278 115 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 SNORD51-201ENST00000384320 80 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 RNU6-121P-201ENST00000410525 99 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 RNU4-78P-201ENST00000410940 126 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 POLHP1-201ENST00000411806 470 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 HMGN2P7-201ENST00000456186 273 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 AL136097.1-201ENST00000456945 913 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 AC091179.1-201ENST00000461606 579 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 RPL9P9-202ENST00000466501 579 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 AC104806.1-201ENST00000508720 308 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 RNU6-64P-201ENST00000517119 105 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 HIGD1AP1-201ENST00000550979 275 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 AL136313.1-201ENST00000624804 202 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 HSPA8P1-201ENST00000425843 1833 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 EXOC5P1-201ENST00000510543 1969 ntBASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
COL17A1Q9UMD9 XIAPP3-201ENST00000312918 795 ntBASIC5□□□□□ -1.61
COL17A1Q9UMD9 MIR335-201ENST00000362173 94 ntBASIC5□□□□□ -1.61
COL17A1Q9UMD9 RNU1-70P-201ENST00000362618 164 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms