Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 EXOSC3P1-201ENST00000448649 500 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 USP9YP25-201ENST00000457708 443 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 RPS29P23-201ENST00000458635 123 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 snoU13.14-201ENST00000459372 104 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 RPL30P6-201ENST00000475925 342 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 RPL9P6-201ENST00000492764 598 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 AC134050.1-201ENST00000495088 933 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 FAM206BP-201ENST00000510179 541 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 MTATP6P15-201ENST00000527233 835 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 AC018630.3-201ENST00000542637 96 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 MIR3198-2-201ENST00000577868 80 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 WISP1-OT1-201ENST00000602893 642 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 AC091834.1-201ENST00000614543 472 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 AC006386.2-201ENST00000624491 75 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 AC012005.1-201ENST00000624575 75 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 MIR1248-201ENST00000629190 106 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 AL161722.3-201ENST00000605789 2983 ntBASIC1.42□□□□□ -2.18
VCX3AQ9NNX9 MIR150-201ENST00000385048 84 ntBASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 SNORA48.1-201ENST00000390879 135 ntBASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AC003989.2-201ENST00000440224 169 ntBASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AC005908.1-201ENST00000468701 347 ntBASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AC093259.1-201ENST00000509755 300 ntBASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AL356057.1-201ENST00000533798 831 ntBASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AC144521.1-201ENST00000607148 956 ntBASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AC097478.2-201ENST00000610572 514 ntBASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AC099842.1-201ENST00000619919 596 ntBASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC1.41□□□□□ -2.18
VCX3AQ9NNX9 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
VCX3AQ9NNX9 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.4□□□□□ -2.18
VCX3AQ9NNX9 ZNF680P1-201ENST00000436625 1469 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 UBE2Q2P12-201ENST00000414573 204 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 AL353777.1-201ENST00000425552 326 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 AC114801.2-201ENST00000503825 781 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 MTCYBP40-201ENST00000509390 1135 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 RNU2-10P-201ENST00000516375 211 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 Y_RNA.687-201ENST00000516558 91 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 RNU6-1003P-201ENST00000517099 105 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 LARP7P3-201ENST00000579888 337 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 DEFB131E-202ENST00000602581 683 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 AL139022.2-201ENST00000606934 443 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 AC063943.3-201ENST00000615562 356 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 AC004777.1-201ENST00000624317 287 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 AC243829.7-201ENST00000633081 225 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 AC092881.1-201ENST00000638218 2733 ntBASIC1.4□□□□□ -2.19
VCX3AQ9NNX9 RNY4P24-201ENST00000362735 96 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 SNORA5B-201ENST00000363786 132 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 MIR1304-201ENST00000408243 91 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 RNA5SP425-201ENST00000410336 112 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 AC015922.2-201ENST00000435593 184 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 NDUFB1P2-201ENST00000449477 176 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 HSPE1P23-201ENST00000509838 286 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 RNU6-991P-201ENST00000516168 107 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 RNU6-201P-201ENST00000517100 61 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 SNORA70.24-201ENST00000517233 118 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 HSPE1P18-201ENST00000517602 280 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 AL138889.2-201ENST00000603883 242 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 AL033523.1-201ENST00000605153 153 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 BX248123.2-201ENST00000606318 124 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 AP002782.1-201ENST00000623107 614 ntBASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
VCX3AQ9NNX9 AC091812.1-201ENST00000432235 1948 ntBASIC1.38□□□□□ -2.19
VCX3AQ9NNX9 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
VCX3AQ9NNX9 AL445523.1-201ENST00000451184 1362 ntBASIC1.38□□□□□ -2.19
VCX3AQ9NNX9 Y_RNA.99-201ENST00000363138 105 ntBASIC1.38□□□□□ -2.19
VCX3AQ9NNX9 SNORD46.1-201ENST00000364139 104 ntBASIC1.38□□□□□ -2.19
VCX3AQ9NNX9 MIR29B2-201ENST00000385055 81 ntBASIC1.38□□□□□ -2.19
VCX3AQ9NNX9 RNA5SP390-201ENST00000410191 113 ntBASIC1.38□□□□□ -2.19
VCX3AQ9NNX9 Y_RNA.597-201ENST00000410463 100 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms