Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC005046.1-201ENST00000608515 625 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC004852.3-201ENST00000614131 326 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 AC090617.7-201ENST00000623952 126 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PCIF1Q9H4Z3 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
PCIF1Q9H4Z3 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 RNU6-336P-201ENST00000364891 107 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 RNU6-898P-201ENST00000365627 104 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 Y_RNA.428-201ENST00000384078 102 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 MIR490-201ENST00000384865 128 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 MIR521-1-201ENST00000384902 87 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 MIR670-201ENST00000390142 98 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 AL138878.1-201ENST00000405131 347 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 U3.37-201ENST00000408528 213 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 HMGB3P8-201ENST00000449709 577 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 AC068781.1-201ENST00000488231 618 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 AC110768.1-201ENST00000509222 400 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 AC006445.2-201ENST00000510061 472 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 SNORA25.10-201ENST00000515926 124 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 RNU6-264P-201ENST00000517134 104 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 Y_RNA.720-201ENST00000517166 92 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 SNORD116.3-201ENST00000517176 78 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 AL158827.2-201ENST00000602494 330 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 MIR7851-201ENST00000610611 160 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 AL691447.3-201ENST00000635020 330 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 CUL1P1-201ENST00000509510 2425 ntBASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
PCIF1Q9H4Z3 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 AL133383.2-201ENST00000622958 2336 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 RNA5SP197-201ENST00000363357 119 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 Y_RNA.158-201ENST00000363651 101 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 AL591034.2-201ENST00000402839 359 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 MTND3P2-201ENST00000438452 342 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 RBMY2UP-201ENST00000453474 324 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 MTND5P22-201ENST00000458380 195 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 AC133134.1-201ENST00000466800 359 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 RPS29P20-201ENST00000489592 171 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 RPS27AP10-201ENST00000496103 208 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 FTH1P9-201ENST00000513251 355 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 RNU6-377P-201ENST00000515965 102 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 IGKV2-26-201ENST00000518305 343 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 AC011602.1-201ENST00000546484 331 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 SUB1P3-201ENST00000564581 315 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 MIR4273-201ENST00000582824 84 ntBASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
PCIF1Q9H4Z3 AL513302.2-201ENST00000562313 1842 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 FAM35BP-202ENST00000497389 3337 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 U3.6-201ENST00000363622 211 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 RNU1-115P-201ENST00000365329 160 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 Y_RNA.533-201ENST00000384596 114 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 RPS4XP3-201ENST00000398541 413 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 RHEBP3-201ENST00000411920 351 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 AC099548.1-201ENST00000421443 426 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 MTND3P9-201ENST00000429526 346 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 BTF3P15-201ENST00000455606 336 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 RN7SL293P-201ENST00000481765 281 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 AC105758.1-201ENST00000506038 399 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 SNORA70.19-201ENST00000516717 90 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 RNU6-612P-201ENST00000516909 102 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 AP005902.1-201ENST00000521358 186 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 AP004607.1-201ENST00000524456 203 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 LINC00933-203ENST00000559812 219 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 MIR8076-201ENST00000611401 83 ntBASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.75□□□□□ -1.81
PCIF1Q9H4Z3 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms