Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 BNIP3P9-201ENST00000603714 553 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 AC123912.5-201ENST00000605470 343 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC42Q96M95 SNORD114-21-201ENST00000606412 72 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC42Q96M95 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.12□□□□□ -2.23
CCDC42Q96M95 AC009269.6-201ENST00000621778 588 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 AC093648.1-201ENST00000623546 606 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.12□□□□□ -2.23
CCDC42Q96M95 HAUS6P2-201ENST00000433254 2404 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CCDC42Q96M95 SNORA22-201ENST00000383907 134 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 SNORA22C-201ENST00000384614 134 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 RNU6-14P-201ENST00000384630 106 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 TIMM9P2-201ENST00000419324 266 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.11□□□□□ -2.23
CCDC42Q96M95 CR769776.1-201ENST00000441254 787 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 AL078601.1-201ENST00000444542 271 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.11□□□□□ -2.23
CCDC42Q96M95 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.11□□□□□ -2.23
CCDC42Q96M95 RPS26P55-201ENST00000471178 356 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 MED28P2-201ENST00000475771 317 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 RNY4P37-201ENST00000516225 96 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 SNORA31.19-201ENST00000517079 126 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 AC026616.1-201ENST00000523157 525 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 SNORA77B-201ENST00000578179 125 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 AC012065.4-201ENST00000602445 679 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 AC090186.1-201ENST00000605991 572 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC1.11□□□□□ -2.23
CCDC42Q96M95 AL121890.5-201ENST00000620848 304 ntBASIC1.11□□□□□ -2.23
CCDC42Q96M95 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.1□□□□□ -2.23
CCDC42Q96M95 RNU6-1284P-201ENST00000363701 100 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 RNU6-944P-201ENST00000364023 107 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 RNU4-51P-201ENST00000364206 140 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 MIR19A-201ENST00000384878 82 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 MIR764-201ENST00000390811 85 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 SNORA40C-201ENST00000391285 128 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC1.1□□□□□ -2.23
CCDC42Q96M95 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC1.1□□□□□ -2.23
CCDC42Q96M95 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC1.1□□□□□ -2.23
CCDC42Q96M95 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC1.1□□□□□ -2.23
CCDC42Q96M95 AC108729.1-201ENST00000487812 947 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 RPS3AP22-201ENST00000488297 769 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 AP006587.4-201ENST00000526053 529 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 DEFB130C-202ENST00000530001 230 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 RPL21P5-201ENST00000554662 472 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 SUB1P4-201ENST00000566062 339 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 AC136618.2-201ENST00000575091 400 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 MIR4293-201ENST00000584305 78 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 VN1R83P-201ENST00000595685 445 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 AC103810.9-201ENST00000606688 112 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 AC012467.1-201ENST00000607740 256 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 PCMTD1P7-201ENST00000634506 357 ntBASIC1.1□□□□□ -2.23
CCDC42Q96M95 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.23
CCDC42Q96M95 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
CCDC42Q96M95 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.09□□□□□ -2.23
CCDC42Q96M95 RNU6-843P-201ENST00000384454 104 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
CCDC42Q96M95 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
CCDC42Q96M95 RPS12P24-201ENST00000412619 387 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.09□□□□□ -2.23
CCDC42Q96M95 TOMM20P4-201ENST00000427861 435 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 MTCO3P5-201ENST00000433620 714 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 HMGN2P18-201ENST00000450680 270 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 FDX1P2-201ENST00000450769 375 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 AC087477.1-201ENST00000465747 340 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 RPL30P7-201ENST00000479312 323 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 MTCYBP40-201ENST00000509390 1135 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 RNU6-64P-201ENST00000517119 105 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC1.09□□□□□ -2.23
CCDC42Q96M95 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.09□□□□□ -2.23
CCDC42Q96M95 TRAV32-201ENST00000553993 340 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 MIR4295-201ENST00000585286 85 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.09□□□□□ -2.23
CCDC42Q96M95 AC112204.3-201ENST00000623822 332 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 MIR3529-201ENST00000637713 78 ntBASIC1.09□□□□□ -2.23
CCDC42Q96M95 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.09□□□□□ -2.24
CCDC42Q96M95 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.08□□□□□ -2.24
CCDC42Q96M95 MIR302D-201ENST00000362275 68 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 RNU6-655P-201ENST00000362858 107 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 RNU6-289P-201ENST00000364093 107 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 RNU6-487P-201ENST00000365430 104 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC42Q96M95 RPL17P35-201ENST00000432217 549 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC42Q96M95 SNRPEP7-201ENST00000438350 220 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC42Q96M95 DUXAP8-207ENST00000456786 622 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 AC093259.1-201ENST00000509755 300 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 AC027338.1-201ENST00000514840 825 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 RNU6-334P-201ENST00000517072 102 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 AP003122.4-201ENST00000530980 758 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 AC087897.1-201ENST00000550134 156 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC42Q96M95 HSPE1P19-201ENST00000603327 295 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 DDX43P2-201ENST00000604753 1354 ntBASIC1.08□□□□□ -2.24
CCDC42Q96M95 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC1.07□□□□□ -2.24
CCDC42Q96M95 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC42Q96M95 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC42Q96M95 RNU6-858P-201ENST00000362436 107 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms