Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNA5SP24-201ENST00000516478 95 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC109329.1-201ENST00000518744 317 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 RPL7P20-201ENST00000520308 745 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC107953.1-201ENST00000522216 297 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AP002963.1-201ENST00000530590 184 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 ARL2BPP2-201ENST00000550907 489 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC024909.2-201ENST00000553035 286 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 ZNF519P3-201ENST00000557158 1032 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC136619.2-201ENST00000563361 631 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC073410.2-201ENST00000603240 332 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AL096840.1-201ENST00000603287 93 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC108747.1-201ENST00000609508 535 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC027807.2-201ENST00000616099 408 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC243829.7-201ENST00000633081 225 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AL359851.1-201ENST00000569460 4997 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 HAUS6P2-201ENST00000433254 2404 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 FGF7P2-201ENST00000332473 296 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-858P-201ENST00000362436 107 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 Y_RNA.194-201ENST00000363985 102 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 RNU5E-5P-201ENST00000365379 116 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 Y_RNA.359-201ENST00000365498 102 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 RNU1-57P-201ENST00000384491 166 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 RPS20P2-201ENST00000402520 389 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 FCF1P10-201ENST00000407590 479 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AL356583.2-201ENST00000426536 280 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 RPL37P21-201ENST00000435890 276 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AL353689.1-201ENST00000438895 199 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 PMCHL2-203ENST00000457791 237 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AC082651.2-201ENST00000496833 166 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AC006362.1-201ENST00000567392 174 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AGGF1P4-201ENST00000568249 801 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AC012360.2-201ENST00000609349 391 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AC138749.5-201ENST00000611461 208 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AC084782.3-201ENST00000612282 578 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AC005296.1-201ENST00000616145 209 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AC116165.2-201ENST00000616705 206 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AC103710.2-202ENST00000641454 2853 ntBASIC2.18□□□□□ -2.06
ZNF540Q8NDQ6 AC007336.1-201ENST00000576365 3828 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-1010P-201ENST00000362757 107 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 U3.12-201ENST00000364498 214 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 RNU4-91P-201ENST00000364778 135 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 SNORA70B-201ENST00000384210 135 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-809P-201ENST00000384461 107 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 AL133475.1-201ENST00000404414 305 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 FTH1P15-201ENST00000406984 280 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 CDK8P2-201ENST00000415020 547 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 MTCO2P34-201ENST00000421994 607 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 HMGN2P38-201ENST00000423806 265 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 USP9YP14-201ENST00000430663 563 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 RPL22P17-201ENST00000438729 315 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 MTCO2P7-201ENST00000446518 666 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 AL031659.1-201ENST00000447075 539 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 RNA5SP269-201ENST00000459032 137 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 MED28P2-201ENST00000475771 317 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 RPL23AP45-201ENST00000476406 468 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 MTAPP1-201ENST00000489154 819 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 FAM92A1P2-202ENST00000504766 877 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-586P-201ENST00000517265 104 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 OR5B19P-201ENST00000531766 928 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 NDUFA5P6-201ENST00000542110 379 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 SNRPGP17-201ENST00000603780 214 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 AC007621.1-201ENST00000604544 437 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 AC087752.4-201ENST00000605911 462 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 AC067747.1-201ENST00000608026 250 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 AC103591.3-201ENST00000608684 209 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 AC064859.1-201ENST00000624741 174 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 AC093591.3-201ENST00000634516 308 ntBASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
ZNF540Q8NDQ6 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 RNU4-1-201ENST00000363925 141 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-487P-201ENST00000365430 104 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 SNORA4.3-201ENST00000365564 137 ntBASIC2.16□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-1119P-201ENST00000384349 108 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms