Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MTND2P30-201ENST00000456663 382 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 RNU7-136P-201ENST00000458819 69 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AC010631.1-201ENST00000474150 156 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC0.69□□□□□ -2.3
FOXA3P55318 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
FOXA3P55318 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.69□□□□□ -2.3
FOXA3P55318 HMGB1P28-201ENST00000507778 552 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AC108078.1-201ENST00000508073 725 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AC121161.1-201ENST00000510606 652 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.69□□□□□ -2.3
FOXA3P55318 AP006587.4-201ENST00000526053 529 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 CENPUP1-201ENST00000526649 1202 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AC087441.2-201ENST00000529141 262 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC0.69□□□□□ -2.3
FOXA3P55318 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC0.69□□□□□ -2.3
FOXA3P55318 RPS3AP4-201ENST00000555161 764 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC0.69□□□□□ -2.3
FOXA3P55318 MIR3937-201ENST00000580135 106 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AC021171.1-201ENST00000603137 706 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 MIR8084-201ENST00000614105 89 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 uc_338.15-201ENST00000615470 191 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AL157770.1-201ENST00000623049 439 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 AC093648.1-201ENST00000623546 606 ntBASIC0.69□□□□□ -2.3
FOXA3P55318 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
FOXA3P55318 RNU1-124P-201ENST00000363861 145 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 RPS12P24-201ENST00000412619 387 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 SNRPEP10-201ENST00000420249 274 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC0.68□□□□□ -2.3
FOXA3P55318 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.68□□□□□ -2.3
FOXA3P55318 FO393414.1-201ENST00000428697 1184 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.68□□□□□ -2.3
FOXA3P55318 MTCO3P43-201ENST00000440974 771 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 PGBD4P5-201ENST00000445958 426 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.68□□□□□ -2.3
FOXA3P55318 AC114982.1-201ENST00000469402 321 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 RPS3AP22-201ENST00000488297 769 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.68□□□□□ -2.3
FOXA3P55318 MTCYBP40-201ENST00000509390 1135 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 AC093259.1-201ENST00000509755 300 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 RNU6-583P-201ENST00000516012 92 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 SNORD116-28-201ENST00000516123 91 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 OR6C7P-201ENST00000547875 934 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 MIR3169-201ENST00000578032 83 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 AC005786.1-201ENST00000588553 154 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
FOXA3P55318 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC0.68□□□□□ -2.3
FOXA3P55318 AC009269.6-201ENST00000621778 588 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 MTND4P21-201ENST00000453886 1357 ntBASIC0.68□□□□□ -2.3
FOXA3P55318 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.67□□□□□ -2.3
FOXA3P55318 RNU5B-1-201ENST00000363286 116 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 RNU6-112P-201ENST00000363599 104 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 RNU6-1065P-201ENST00000384513 106 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 MTCO1P56-201ENST00000401674 224 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 RN7SKP61-201ENST00000410642 295 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 RPL21P24-201ENST00000413752 448 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 POLR2J4-204ENST00000418424 324 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AL589872.1-201ENST00000426602 288 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AC108667.1-201ENST00000428618 249 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 FTH1P12-201ENST00000432137 551 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AC079776.3-201ENST00000450665 370 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 HMGN2P18-201ENST00000450680 270 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 FDX1P2-201ENST00000450769 375 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC0.67□□□□□ -2.3
FOXA3P55318 snoU13.23-201ENST00000458863 104 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AC087343.1-201ENST00000477341 475 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AC104629.1-201ENST00000494226 508 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 LAMTOR3P2-201ENST00000504479 232 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 SNORA31.3-201ENST00000516029 96 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 RNU6-351P-201ENST00000516097 100 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC0.67□□□□□ -2.3
FOXA3P55318 AC022784.5-201ENST00000522241 437 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC0.67□□□□□ -2.3
FOXA3P55318 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.67□□□□□ -2.3
FOXA3P55318 SLC2A13P1-201ENST00000531560 322 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 HIGD1AP17-201ENST00000554576 276 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AC015712.3-201ENST00000559380 164 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AC136618.2-201ENST00000575091 400 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC0.67□□□□□ -2.3
FOXA3P55318 MIR6078-201ENST00000611069 100 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AC130454.1-201ENST00000622948 401 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AC099654.5-201ENST00000636479 350 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 AC099654.9-201ENST00000637055 678 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 CDR1-202ENST00000625883 1485 ntBASIC0.67□□□□□ -2.3
FOXA3P55318 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.67□□□□□ -2.3
FOXA3P55318 RNU6-655P-201ENST00000362858 107 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 RNA5SP493-201ENST00000364115 91 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 Y_RNA.255-201ENST00000364581 97 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 RNU6-968P-201ENST00000384076 107 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 RNU6-1122P-201ENST00000384449 107 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 MIR29B2-201ENST00000385055 81 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 MIR146A-201ENST00000385201 99 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 5S_rRNA.2-201ENST00000391293 112 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 FTH1P15-201ENST00000406984 280 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AP1B1P2-201ENST00000416196 106 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.66□□□□□ -2.3
FOXA3P55318 MTCO1P3-201ENST00000429327 192 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.66□□□□□ -2.3
FOXA3P55318 AL158053.1-201ENST00000441503 453 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AL096829.2-201ENST00000446582 742 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms