Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
COL8A1P27658 U3.30-201ENST00000391308 210 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 RNA5SP241-201ENST00000391326 114 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 AL512633.1-201ENST00000399931 655 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 RNA5SP475-201ENST00000410568 110 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 RN7SKP53-201ENST00000411337 315 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 YPEL5P1-201ENST00000419731 367 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 AC008065.1-201ENST00000428525 348 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 AC006028.1-201ENST00000438379 402 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 ANP32BP2-201ENST00000454525 545 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 AC146507.2-201ENST00000460608 476 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 RPL23AP70-201ENST00000483361 460 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 AC091912.1-201ENST00000511351 248 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 RNU6-513P-201ENST00000516104 104 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 SNORA43.2-201ENST00000516652 128 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 RNU1-45P-201ENST00000517191 141 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 RNU2-12P-201ENST00000517216 168 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.24□□□□□ -1.73
COL8A1P27658 MRPL49P2-201ENST00000521066 465 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.24□□□□□ -1.73
COL8A1P27658 RN7SL290P-201ENST00000578661 300 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 AC116447.1-201ENST00000613153 453 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 AP001318.4-201ENST00000616637 121 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 uc_338.7-201ENST00000621834 124 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 AC138915.1-201ENST00000565427 1685 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.24□□□□□ -1.73
COL8A1P27658 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.24□□□□□ -1.73
COL8A1P27658 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL8A1P27658 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL8A1P27658 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.24□□□□□ -1.73
COL8A1P27658 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.24□□□□□ -1.73
COL8A1P27658 AC104260.2-201ENST00000623551 3497 ntBASIC4.24□□□□□ -1.73
COL8A1P27658 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL8A1P27658 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL8A1P27658 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL8A1P27658 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.23□□□□□ -1.73
COL8A1P27658 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL8A1P27658 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL8A1P27658 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.23□□□□□ -1.73
COL8A1P27658 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
COL8A1P27658 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL8A1P27658 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.23□□□□□ -1.73
COL8A1P27658 Y_RNA.229-201ENST00000364347 113 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 MIR548A1-201ENST00000385041 97 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 MIR589-201ENST00000385238 99 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 RNU6-554P-201ENST00000410466 106 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 Y_RNA.617-201ENST00000410920 90 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 AC096649.2-201ENST00000416186 393 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.23□□□□□ -1.73
COL8A1P27658 AC091390.3-201ENST00000426478 338 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.23□□□□□ -1.73
COL8A1P27658 AC109327.2-201ENST00000448339 378 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 Y_RNA.649-201ENST00000459077 103 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 snoU13.3-201ENST00000459441 104 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 RPS20P22-201ENST00000473700 357 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 SCARNA22-201ENST00000503991 125 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 AC098976.1-201ENST00000513014 541 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 RNU6-65P-201ENST00000516332 98 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 RNU6-412P-201ENST00000516434 106 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 snoMBII-202.2-201ENST00000517263 86 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC4.23□□□□□ -1.73
COL8A1P27658 AC019206.1-201ENST00000621938 425 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
COL8A1P27658 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
COL8A1P27658 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL8A1P27658 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL8A1P27658 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL8A1P27658 AC093535.2-201ENST00000624769 2326 ntBASIC4.23□□□□□ -1.73
COL8A1P27658 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL8A1P27658 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL8A1P27658 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL8A1P27658 AL136164.4-201ENST00000625013 2135 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
COL8A1P27658 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL8A1P27658 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.22□□□□□ -1.73
COL8A1P27658 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.22□□□□□ -1.73
COL8A1P27658 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
COL8A1P27658 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
COL8A1P27658 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.22□□□□□ -1.73
COL8A1P27658 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
COL8A1P27658 RNU6-766P-201ENST00000362478 107 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 Y_RNA.120-201ENST00000363304 110 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 Y_RNA.346-201ENST00000365385 112 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 RN7SKP202-201ENST00000410439 330 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 RNU6-603P-201ENST00000411403 107 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 RPS3AP1-201ENST00000413190 320 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 AC245047.4-201ENST00000433189 144 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.22□□□□□ -1.73
COL8A1P27658 RN7SL132P-201ENST00000478131 296 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 AL049874.1-201ENST00000489560 388 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 ENPP7P11-201ENST00000505915 627 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.22□□□□□ -1.73
COL8A1P27658 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.22□□□□□ -1.73
COL8A1P27658 AC099669.2-201ENST00000616549 437 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 AC024581.2-201ENST00000619986 252 ntBASIC4.22□□□□□ -1.73
COL8A1P27658 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
COL8A1P27658 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL8A1P27658 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms