Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 UBE2V1P4-201ENST00000425374 344 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 RPS15AP10-201ENST00000432472 382 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 IGKV2-26-201ENST00000518305 343 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 AC022080.3-201ENST00000544433 482 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 AC026464.5-201ENST00000562497 722 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 AC100830.2-201ENST00000581636 240 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 MIR3672-201ENST00000584290 82 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 ELOCP5-201ENST00000604924 333 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 MIR4727-201ENST00000622232 55 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 TNPO1P3-201ENST00000436471 2662 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 MIR93-201ENST00000385024 80 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 AL117339.3-201ENST00000418733 162 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 AC097462.2-201ENST00000504623 481 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 SEM1P1-201ENST00000506694 209 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 MTCYBP40-201ENST00000509390 1135 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 MIR5004-201ENST00000579078 107 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 AC023043.2-201ENST00000589678 1026 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 AC021646.1-201ENST00000605469 484 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 AL121917.1-203ENST00000605534 577 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 AL137790.1-201ENST00000634283 177 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 ZNF519P1-201ENST00000449011 1626 ntBASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
CCDC9Q9Y3X0 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 HAUS6P2-201ENST00000433254 2404 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 MIR422A-201ENST00000362286 90 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 Y_RNA.166-201ENST00000363730 102 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 RNU6-1245P-201ENST00000411130 106 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 AC009296.1-201ENST00000443146 155 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 Z75741.1-201ENST00000446793 314 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 MTND5P20-201ENST00000448677 143 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 HMGN1P12-201ENST00000499125 195 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 UBE2V2P2-201ENST00000587677 504 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 uc_338.5-201ENST00000611839 155 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 AL138726.1-201ENST00000614873 333 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 AL008636.1-201ENST00000625038 1018 ntBASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC9Q9Y3X0 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 RNU6-562P-201ENST00000362731 107 ntBASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 RNA5SP306-201ENST00000411087 107 ntBASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 ATG3P1-201ENST00000419507 911 ntBASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 AC096745.1-201ENST00000509945 370 ntBASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 RNU7-30P-201ENST00000516835 62 ntBASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 AC103996.1-201ENST00000555468 102 ntBASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 AC090877.1-201ENST00000561418 344 ntBASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 MIR4276-201ENST00000584832 70 ntBASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC9Q9Y3X0 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 Y_RNA.212-201ENST00000364177 102 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 SNORD21-201ENST00000383953 95 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 EI24P2-201ENST00000397776 1076 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 AL139396.1-201ENST00000421137 167 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 SNAP23P1-201ENST00000433229 246 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 RPL32P28-201ENST00000443577 397 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 RNU6-1037P-201ENST00000459571 107 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 AC008526.1-201ENST00000509149 338 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 AC092436.3-201ENST00000511788 257 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 Y_RNA.702-201ENST00000516843 96 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 CBX3P7-201ENST00000532876 502 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 SCOCP1-201ENST00000554676 349 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 AC138761.3-201ENST00000579993 334 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 MIR4672-201ENST00000583126 81 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 uc_338.14-201ENST00000613162 166 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 AC092794.2-201ENST00000620933 563 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 AL359757.2-201ENST00000624309 274 ntBASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC9Q9Y3X0 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 MIR449A-201ENST00000362113 91 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms