Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-937P-201ENST00000384325 106 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 SNORA40C-201ENST00000391285 128 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 MTCYBP2-201ENST00000407745 171 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 RN7SL542P-201ENST00000467147 294 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 RPS20P22-201ENST00000473700 357 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 AC020593.1-201ENST00000507399 299 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 AC026784.1-201ENST00000507986 352 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 Y_RNA.706-201ENST00000516933 99 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 RNA5SP179-201ENST00000517284 121 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 AC091144.1-201ENST00000519573 138 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 AP004371.1-201ENST00000525240 214 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 MIR5685-201ENST00000579080 79 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 MIR3133-201ENST00000583157 78 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 RPL23AP78-201ENST00000599928 470 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 AC091167.4-201ENST00000605079 184 ntBASIC5□□□□□ -1.61
CHMP3Q9Y3E7 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
CHMP3Q9Y3E7 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 MARK2P15-201ENST00000432204 2186 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 ANKRD36BP1-201ENST00000358576 1779 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 DEFB108F-201ENST00000344638 222 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 U3.15-201ENST00000365398 212 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 AL160314.1-201ENST00000490836 438 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 RPS23P5-201ENST00000495419 428 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 ANXA2P1-201ENST00000505539 926 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-572P-201ENST00000516724 80 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 AC109479.2-201ENST00000517842 174 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 CASP1P1-201ENST00000526345 212 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 HSPE1P5-201ENST00000561489 272 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 BRDTP1-201ENST00000605735 677 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 MIR432-201ENST00000606207 94 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 AC240442.1-201ENST00000616055 283 ntBASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.99□□□□□ -1.61
CHMP3Q9Y3E7 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 AL133412.1-201ENST00000380194 2992 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-222P-201ENST00000362438 107 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 SNORD113-8-201ENST00000363497 74 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 SNORA48.7-201ENST00000391302 135 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 Y_RNA.793-201ENST00000411222 111 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 CYP4F29P-201ENST00000420685 446 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 FTH1P6-201ENST00000430768 320 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 AL136097.1-201ENST00000456945 913 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 Y_RNA.644-201ENST00000459006 113 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 Y_RNA.674-201ENST00000516362 113 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 AC010186.2-204ENST00000537668 439 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 MED28P6-201ENST00000558776 231 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 AC060766.3-201ENST00000591442 263 ntBASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CHMP3Q9Y3E7 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-545P-201ENST00000362681 104 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 Y_RNA.83-201ENST00000363005 113 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 RPL23AP48-201ENST00000406913 488 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 AC244098.2-201ENST00000422068 99 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 AL591043.1-201ENST00000432461 424 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 AC092798.1-201ENST00000458542 409 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 AC010285.1-201ENST00000470580 392 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 AC107393.1-201ENST00000512403 346 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 SERF1AP1-201ENST00000514575 187 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 RNU7-175P-201ENST00000515915 61 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-377P-201ENST00000515965 102 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 RNU6-1012P-201ENST00000516606 109 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 Y_RNA.772-201ENST00000606692 102 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 AC090132.2-201ENST00000615881 347 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms