Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 RNU2-68P-201ENST00000410878 191 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 RNA5SP508-201ENST00000411327 119 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.08□□□□□ -1.92
DDX4Q9NQI0 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.08□□□□□ -1.92
DDX4Q9NQI0 RPL36AP53-201ENST00000432891 316 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 UBBP3-201ENST00000445497 241 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.08□□□□□ -1.92
DDX4Q9NQI0 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC3.08□□□□□ -1.92
DDX4Q9NQI0 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.08□□□□□ -1.92
DDX4Q9NQI0 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.08□□□□□ -1.92
DDX4Q9NQI0 AC104136.1-201ENST00000512969 394 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.08□□□□□ -1.92
DDX4Q9NQI0 SNORA9.3-201ENST00000516383 129 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 MIR1273C-201ENST00000578669 77 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 MIR3941-201ENST00000582572 103 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 MIR548AC-201ENST00000585049 88 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 MIR4424-201ENST00000585257 86 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.08□□□□□ -1.92
DDX4Q9NQI0 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
DDX4Q9NQI0 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
DDX4Q9NQI0 AC108206.1-201ENST00000570186 4159 ntBASIC3.08□□□□□ -1.92
DDX4Q9NQI0 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
DDX4Q9NQI0 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.07□□□□□ -1.92
DDX4Q9NQI0 AC099654.7-201ENST00000635788 2127 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
DDX4Q9NQI0 Y_RNA.157-201ENST00000363638 102 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 Y_RNA.231-201ENST00000364358 102 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 MIR514A2-201ENST00000385131 88 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 MIR514A3-201ENST00000385132 88 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 MIR887-201ENST00000401258 79 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 EEF1A1P40-201ENST00000412883 573 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 AL513477.1-202ENST00000417061 214 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.07□□□□□ -1.92
DDX4Q9NQI0 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.07□□□□□ -1.92
DDX4Q9NQI0 SUMO2P6-201ENST00000505273 288 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.07□□□□□ -1.92
DDX4Q9NQI0 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.07□□□□□ -1.92
DDX4Q9NQI0 AC079140.5-201ENST00000507882 310 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 AC008549.1-201ENST00000512900 643 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 RNU6-358P-201ENST00000516564 75 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 RNA5SP165-201ENST00000517142 115 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 BNIP3P6-201ENST00000549284 499 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.07□□□□□ -1.92
DDX4Q9NQI0 AC060780.3-201ENST00000589464 80 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 AL355598.1-201ENST00000604169 202 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 AC004805.2-201ENST00000605382 482 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 FTX_3.1-201ENST00000610451 147 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 DUSP12P1-201ENST00000612874 516 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 AL590808.1-201ENST00000618696 141 ntBASIC3.07□□□□□ -1.92
DDX4Q9NQI0 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 Y_RNA.33-201ENST00000362591 102 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 RNU6-82P-201ENST00000363970 107 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 RNU4-66P-201ENST00000365199 138 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 SNORA4.3-201ENST00000365564 137 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 RNU6-434P-201ENST00000384376 107 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 FGF7P8-201ENST00000402994 292 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 RPS4XP7-201ENST00000406274 780 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 RPL7P10-201ENST00000417407 739 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 USP9YP20-201ENST00000419224 558 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 MTND5P19-201ENST00000424872 1794 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AC011816.1-201ENST00000441346 546 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 MTND3P16-201ENST00000452205 344 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 CECR9-201ENST00000453421 199 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 SCARNA18-201ENST00000459004 134 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 TRBV12-1-201ENST00000479785 344 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AC026801.1-201ENST00000497178 464 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AC010525.2-201ENST00000590920 195 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 RMST_3.1-201ENST00000611651 109 ntBASIC3.06□□□□□ -1.92
DDX4Q9NQI0 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
DDX4Q9NQI0 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 HSPA8P4-201ENST00000511877 1920 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 MTND5P7-201ENST00000413558 1798 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.05□□□□□ -1.92
DDX4Q9NQI0 RNU6-1127P-201ENST00000384580 107 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 MIR27B-201ENST00000385129 97 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 RNA5SP354-201ENST00000391247 136 ntBASIC3.05□□□□□ -1.92
DDX4Q9NQI0 RPL21P75-201ENST00000396599 483 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms