Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 uc_338.18-201ENST00000615451 175 ntBASIC8.55□□□□□ -1.04
SENP3Q9H4L4 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
SENP3Q9H4L4 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
SENP3Q9H4L4 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
SENP3Q9H4L4 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
SENP3Q9H4L4 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
SENP3Q9H4L4 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC8.55□□□□□ -1.04
SENP3Q9H4L4 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 SNORD115-2-201ENST00000362842 82 ntBASIC8.54□□□□□ -1.04
SENP3Q9H4L4 SNORD115-20-201ENST00000365099 82 ntBASIC8.54□□□□□ -1.04
SENP3Q9H4L4 AL645733.1-201ENST00000402250 217 ntBASIC8.54□□□□□ -1.04
SENP3Q9H4L4 UBE2Q2P12-201ENST00000414573 204 ntBASIC8.54□□□□□ -1.04
SENP3Q9H4L4 RN7SL817P-201ENST00000480777 288 ntBASIC8.54□□□□□ -1.04
SENP3Q9H4L4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
SENP3Q9H4L4 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC8.53□□□□□ -1.04
SENP3Q9H4L4 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
SENP3Q9H4L4 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
SENP3Q9H4L4 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC8.53□□□□□ -1.04
SENP3Q9H4L4 SCARNA15-201ENST00000607520 4325 ntBASIC8.53□□□□□ -1.04
SENP3Q9H4L4 AP000866.6-201ENST00000638898 3579 ntBASIC8.53□□□□□ -1.04
SENP3Q9H4L4 Y_RNA.470-201ENST00000384307 117 ntBASIC8.53□□□□□ -1.04
SENP3Q9H4L4 RNU6-748P-201ENST00000384648 107 ntBASIC8.53□□□□□ -1.04
SENP3Q9H4L4 FTH1P12-201ENST00000432137 551 ntBASIC8.53□□□□□ -1.04
SENP3Q9H4L4 RPL10P14-201ENST00000565265 298 ntBASIC8.53□□□□□ -1.04
SENP3Q9H4L4 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
SENP3Q9H4L4 RN7SL544P-201ENST00000617232 284 ntBASIC8.53□□□□□ -1.04
SENP3Q9H4L4 RN7SL763P-201ENST00000620922 284 ntBASIC8.53□□□□□ -1.04
SENP3Q9H4L4 MIR1297-201ENST00000637311 77 ntBASIC8.53□□□□□ -1.04
SENP3Q9H4L4 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC8.53□□□□□ -1.04
SENP3Q9H4L4 DMD-202ENST00000343523 5623 ntTSL 5 BASIC8.53□□□□□ -1.04
SENP3Q9H4L4 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC8.53□□□□□ -1.04
SENP3Q9H4L4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
SENP3Q9H4L4 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC8.53□□□□□ -1.04
SENP3Q9H4L4 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
SENP3Q9H4L4 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 RNU105B-201ENST00000364478 208 ntBASIC8.52□□□□□ -1.05
SENP3Q9H4L4 RNU6-1235P-201ENST00000384559 107 ntBASIC8.52□□□□□ -1.05
SENP3Q9H4L4 AC087499.7-201ENST00000441958 109 ntBASIC8.52□□□□□ -1.05
SENP3Q9H4L4 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 RNU6-498P-201ENST00000459468 107 ntBASIC8.52□□□□□ -1.05
SENP3Q9H4L4 Y_RNA.660-201ENST00000516002 120 ntBASIC8.52□□□□□ -1.05
SENP3Q9H4L4 MIR449C-201ENST00000516047 92 ntBASIC8.52□□□□□ -1.05
SENP3Q9H4L4 AC018809.2-201ENST00000602436 3823 ntBASIC8.52□□□□□ -1.05
SENP3Q9H4L4 AC020891.4-201ENST00000605745 93 ntBASIC8.52□□□□□ -1.05
SENP3Q9H4L4 RNU1-30P-201ENST00000606575 163 ntBASIC8.52□□□□□ -1.05
SENP3Q9H4L4 AL136131.3-201ENST00000607600 188 ntBASIC8.52□□□□□ -1.05
SENP3Q9H4L4 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
SENP3Q9H4L4 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
SENP3Q9H4L4 IL33-203ENST00000456383 2501 ntTSL 5 BASIC8.51□□□□□ -1.05
SENP3Q9H4L4 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
SENP3Q9H4L4 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
SENP3Q9H4L4 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
SENP3Q9H4L4 Y_RNA.168-201ENST00000363740 102 ntBASIC8.51□□□□□ -1.05
SENP3Q9H4L4 RNU6-268P-201ENST00000364174 107 ntBASIC8.51□□□□□ -1.05
SENP3Q9H4L4 SNORA25.9-201ENST00000365087 128 ntBASIC8.51□□□□□ -1.05
SENP3Q9H4L4 AC114811.1-201ENST00000507207 168 ntBASIC8.51□□□□□ -1.05
SENP3Q9H4L4 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC8.51□□□□□ -1.05
SENP3Q9H4L4 AC073916.1-201ENST00000545095 130 ntBASIC8.51□□□□□ -1.05
SENP3Q9H4L4 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC8.51□□□□□ -1.05
SENP3Q9H4L4 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC8.51□□□□□ -1.05
SENP3Q9H4L4 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC8.51□□□□□ -1.05
SENP3Q9H4L4 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC8.5□□□□□ -1.05
SENP3Q9H4L4 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
SENP3Q9H4L4 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC8.5□□□□□ -1.05
SENP3Q9H4L4 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
SENP3Q9H4L4 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
SENP3Q9H4L4 MIR223-201ENST00000385204 110 ntBASIC8.5□□□□□ -1.05
SENP3Q9H4L4 MIR154-201ENST00000385243 84 ntBASIC8.5□□□□□ -1.05
SENP3Q9H4L4 MIR493-201ENST00000385254 89 ntBASIC8.5□□□□□ -1.05
SENP3Q9H4L4 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
SENP3Q9H4L4 MIR548G-201ENST00000408442 89 ntBASIC8.5□□□□□ -1.05
SENP3Q9H4L4 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC8.5□□□□□ -1.05
SENP3Q9H4L4 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC8.5□□□□□ -1.05
SENP3Q9H4L4 AL627230.6-201ENST00000611129 280 ntBASIC8.5□□□□□ -1.05
SENP3Q9H4L4 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC8.5□□□□□ -1.05
SENP3Q9H4L4 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
SENP3Q9H4L4 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC8.5□□□□□ -1.05
SENP3Q9H4L4 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 149.1 ms