Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL133475.1-201ENST00000404414 305 ntBASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 GPM6BP3-201ENST00000442797 145 ntBASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 AC022364.2-201ENST00000457963 554 ntBASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 RPL9P33-201ENST00000484311 566 ntBASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 SRIP1-201ENST00000489235 288 ntBASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 RNA5SP24-201ENST00000516478 95 ntBASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 AC026585.1-201ENST00000619582 524 ntBASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 SDR42E1P4-201ENST00000620894 481 ntBASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 AC091931.1-201ENST00000623488 728 ntBASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CHMP4AQ9BY43 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 SNORD116-20-201ENST00000384529 92 ntBASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 HMGN1P14-201ENST00000412459 517 ntBASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 GPR143P-201ENST00000434155 205 ntBASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 MRPL50P4-201ENST00000446432 475 ntBASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 AC245102.2-201ENST00000448956 180 ntBASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 RNU2-46P-201ENST00000517038 113 ntBASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 AP001646.1-201ENST00000527936 915 ntBASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 DUXAP5-201ENST00000529668 529 ntBASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 AC009090.3-201ENST00000616553 565 ntBASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.24□□□□□ -1.89
CHMP4AQ9BY43 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 SNORD3E-201ENST00000362899 217 ntBASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 RNU6-108P-201ENST00000365558 107 ntBASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 CBX3P9-201ENST00000402326 552 ntBASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 CALM1P1-201ENST00000442082 433 ntBASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 AC055731.1-201ENST00000474387 401 ntBASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 AC104136.1-201ENST00000512969 394 ntBASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 Y_RNA.687-201ENST00000516558 91 ntBASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 SNORA43.2-201ENST00000516652 128 ntBASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 CKAP2P1-201ENST00000555477 2049 ntBASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 MIR5694-201ENST00000581190 76 ntBASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 AC008250.2-201ENST00000615261 205 ntBASIC3.23□□□□□ -1.89
CHMP4AQ9BY43 MIR578-201ENST00000384828 96 ntBASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 MIR144-201ENST00000384886 86 ntBASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 MIR29C-201ENST00000385231 88 ntBASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 AL445529.1-201ENST00000398713 389 ntBASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 AL359511.1-201ENST00000402970 211 ntBASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 RPS6P15-201ENST00000431996 751 ntBASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 AC091965.2-201ENST00000512324 613 ntBASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 DEFB131E-202ENST00000602581 683 ntBASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 AC007621.1-201ENST00000604544 437 ntBASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.22□□□□□ -1.89
CHMP4AQ9BY43 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.21□□□□□ -1.89
CHMP4AQ9BY43 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 RNU6-169P-201ENST00000365336 107 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 MIR17-201ENST00000385012 84 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 EEF1A1P40-201ENST00000412883 573 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AC074117.2-201ENST00000417130 397 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AC008267.5-201ENST00000424928 265 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 USP9YP18-201ENST00000425912 695 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AL445567.1-201ENST00000439121 144 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 RPS12P2-201ENST00000439728 269 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AL360271.2-201ENST00000447710 161 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 RPL23AP45-201ENST00000476406 468 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AP000889.2-201ENST00000532684 490 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 MTND3P12-201ENST00000559068 328 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AL031274.2-201ENST00000599419 203 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AC245014.2-201ENST00000603689 287 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AC246785.4-201ENST00000605374 287 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AC093648.1-201ENST00000623546 606 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AL603839.4-201ENST00000624658 1005 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AC016717.2-201ENST00000609089 5141 ntBASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CHMP4AQ9BY43 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 U8.3-201ENST00000363321 132 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 RNU6-371P-201ENST00000364283 108 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 U3.12-201ENST00000364498 214 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 MT-TH-201ENST00000387441 69 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 AL033519.2-201ENST00000403958 392 ntBASIC3.2□□□□□ -1.9
CHMP4AQ9BY43 AL162578.1-201ENST00000406202 378 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms