Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 CKAP2P1-201ENST00000555477 2049 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 MTND4P14-201ENST00000435799 1354 ntBASIC2.61□□□□□ -1.99
CCDC3Q9BQI4 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 Y_RNA.9-201ENST00000362354 101 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 Y_RNA.372-201ENST00000365599 102 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 RNU6-116P-201ENST00000384042 109 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 RNU6-1127P-201ENST00000384580 107 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 RNU6-648P-201ENST00000410190 107 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 Y_RNA.623-201ENST00000411128 95 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 RNU6-607P-201ENST00000411283 108 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AF274854.1-201ENST00000413236 615 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 USP9YP18-201ENST00000425912 695 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 GTF2IP20-201ENST00000431663 360 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 RPL7P54-201ENST00000438336 674 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 SNRPFP3-201ENST00000457792 225 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 RNU7-180P-201ENST00000459240 63 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 TRBV12-1-201ENST00000479785 344 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 RPS27P26-201ENST00000494583 239 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 MTND1P5-201ENST00000517906 940 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AP003033.1-201ENST00000527244 415 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 OR5AQ1P-201ENST00000527596 927 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 HIF1AP1-201ENST00000553642 175 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AL138976.2-201ENST00000563989 694 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 LRRC37A5P-203ENST00000580181 585 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AC010620.2-201ENST00000600135 313 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AL162413.1-201ENST00000603198 110 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 MIR3199-2-201ENST00000636243 86 ntBASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC3Q9BQI4 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 RNY4P14-201ENST00000363656 96 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 SNORA69-201ENST00000383895 132 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 RNU1-109P-201ENST00000383960 147 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 Y_RNA.409-201ENST00000383990 98 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 RNU6-434P-201ENST00000384376 107 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 RNU6-45P-201ENST00000384471 107 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 RNU6-658P-201ENST00000384606 106 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 MIR518D-201ENST00000385014 87 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 RNA5SP354-201ENST00000391247 136 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 AL591416.1-201ENST00000404015 867 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 SNORD88.1-201ENST00000408684 91 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 RNU6-193P-201ENST00000410977 107 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 AL358075.3-201ENST00000426289 226 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 AC009414.1-201ENST00000427200 443 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 RPS29P6-201ENST00000438196 145 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 UBBP3-201ENST00000445497 241 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 RNU6-314P-201ENST00000516574 104 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 AC136619.2-201ENST00000563361 631 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 AL359198.2-201ENST00000611836 194 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 U6.99-201ENST00000637524 83 ntBASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC3Q9BQI4 ASNSP3-201ENST00000451989 1306 ntBASIC2.59□□□□□ -2
CCDC3Q9BQI4 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.59□□□□□ -2
CCDC3Q9BQI4 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -2
CCDC3Q9BQI4 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -2
CCDC3Q9BQI4 RNU6-715P-201ENST00000365204 103 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 XGY1-201ENST00000381172 446 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 RNU6-393P-201ENST00000384475 107 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 AL590002.1-201ENST00000406554 418 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 BTF3P7-201ENST00000407097 488 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 RNU6-908P-201ENST00000410160 94 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 RPL21P90-201ENST00000415692 466 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.58□□□□□ -2
CCDC3Q9BQI4 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC112220.1-201ENST00000434628 355 ntBASIC2.58□□□□□ -2
CCDC3Q9BQI4 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.58□□□□□ -2
CCDC3Q9BQI4 SEPT14P3-201ENST00000439401 183 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms