Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 CALM2P2-201ENST00000428512 440 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 MTATP6P16-201ENST00000434543 526 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 MTCO2P16-201ENST00000436962 677 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 AL161788.1-201ENST00000441805 169 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 AC140059.1-201ENST00000489238 361 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 AC114781.4-201ENST00000513707 639 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 RNU5B-3P-201ENST00000516601 115 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 SNORA31.19-201ENST00000517079 126 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 AP002453.2-201ENST00000533503 320 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 AL670379.10-201ENST00000604330 253 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 AL670379.9-201ENST00000605428 253 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 AC126118.1-201ENST00000607744 628 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 AP001506.1-201ENST00000615444 211 ntBASIC2.28□□□□□ -2.04
VPS39Q96JC1 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.28□□□□□ -2.04
VPS39Q96JC1 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
VPS39Q96JC1 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.05
VPS39Q96JC1 ZNF720P1-201ENST00000562403 1939 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 RNU1-72P-201ENST00000362976 153 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 Y_RNA.111-201ENST00000363248 100 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 UBE2V1P2-201ENST00000397758 440 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AL591416.1-201ENST00000404015 867 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS39Q96JC1 AL356379.1-201ENST00000414105 126 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 USP9YP27-201ENST00000418455 438 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS39Q96JC1 AL591704.1-201ENST00000432574 275 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AC018634.1-201ENST00000437554 401 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AC073614.1-201ENST00000438690 650 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 MTCO1P19-201ENST00000443487 500 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AC244505.5-201ENST00000443639 207 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AL078601.1-201ENST00000444542 271 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS39Q96JC1 AC107032.1-201ENST00000485945 480 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS39Q96JC1 RN7SL636P-201ENST00000497504 294 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS39Q96JC1 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS39Q96JC1 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.27□□□□□ -2.05
VPS39Q96JC1 AC107222.1-201ENST00000510899 637 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 RNU6-123P-201ENST00000516163 102 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 Vault.3-201ENST00000516676 95 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AC090572.1-201ENST00000519251 160 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS39Q96JC1 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
VPS39Q96JC1 DEFB131E-202ENST00000602581 683 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.27□□□□□ -2.05
VPS39Q96JC1 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AC108479.2-201ENST00000617314 601 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 AL162373.1-201ENST00000620433 407 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.27□□□□□ -2.05
VPS39Q96JC1 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.27□□□□□ -2.05
VPS39Q96JC1 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
VPS39Q96JC1 CKAP2P1-201ENST00000555477 2049 ntBASIC2.27□□□□□ -2.05
VPS39Q96JC1 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VPS39Q96JC1 ZNF658B-202ENST00000615961 3375 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
VPS39Q96JC1 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 U3.12-201ENST00000364498 214 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 RNU6-641P-201ENST00000384006 107 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 SNORD116-2-201ENST00000384274 95 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 SNORD116-1-201ENST00000384335 95 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 SNORD116-6-201ENST00000384711 96 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 MIR558-201ENST00000384920 94 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 AC009963.1-201ENST00000417265 157 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 AIMP1P2-201ENST00000425294 312 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 RPS24P1-201ENST00000438550 371 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 snoU109.1-201ENST00000459339 135 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 MTCO2P29-201ENST00000465212 189 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 AC109927.2-201ENST00000506416 303 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 AC108078.2-201ENST00000510750 236 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 RNU6-677P-201ENST00000516914 101 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 MTCYBP20-201ENST00000524239 1129 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 AP001646.1-201ENST00000527936 915 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 AL356057.1-201ENST00000533798 831 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 PSMA3P-201ENST00000555485 635 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 AC025678.1-201ENST00000567861 338 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 SNORD53-201ENST00000579969 78 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 MIR98-201ENST00000606724 119 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.26□□□□□ -2.05
VPS39Q96JC1 AC093648.1-201ENST00000623546 606 ntBASIC2.26□□□□□ -2.05
VPS39Q96JC1 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VPS39Q96JC1 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms