Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RNU6-593P-201ENST00000364716 112 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 Y_RNA.419-201ENST00000384041 102 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 Y_RNA.482-201ENST00000384377 111 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 MIR504-201ENST00000385065 83 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 MIR1302-11-201ENST00000408051 138 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 MIR1302-9-201ENST00000408365 138 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 MIR1302-10-201ENST00000408734 138 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 Y_RNA.623-201ENST00000411128 95 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 RNU6-293P-201ENST00000411259 106 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 UBE2V1P4-201ENST00000425374 344 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 AC007560.1-201ENST00000426912 237 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 HMGB1P9-201ENST00000429856 646 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 AL627311.1-201ENST00000431514 115 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 EEF1B2P7-201ENST00000451177 676 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 AL583843.1-201ENST00000456070 346 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 RNU1-86P-201ENST00000516108 154 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 RNU1-107P-201ENST00000516617 154 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 SNORA31.19-201ENST00000517079 126 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 RNU1-54P-201ENST00000517181 120 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 AC009902.1-201ENST00000519351 183 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 HIGD1AP1-201ENST00000550979 275 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 MIR1302-2-201ENST00000607096 138 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 AL133215.3-201ENST00000609801 448 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 AC007742.2-201ENST00000618226 398 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 AC027309.3-201ENST00000623419 351 ntBASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
SMC1BQ8NDV3 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 SNORD3E-201ENST00000362899 217 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 SNORA75B-201ENST00000384053 137 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 RNU6-601P-201ENST00000384540 107 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 HLFP1-201ENST00000402375 499 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 RNU6-370P-201ENST00000411008 104 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 UBE2D3P2-201ENST00000424409 445 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 BRK1P2-201ENST00000442875 223 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 RPL23AP62-201ENST00000463396 453 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 AL135752.1-201ENST00000479477 471 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 AC139453.3-201ENST00000493276 369 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 AC008885.1-201ENST00000514930 301 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 RNU6-1170P-201ENST00000515974 106 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 Y_RNA.673-201ENST00000516306 88 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 AL442663.2-201ENST00000554385 511 ntBASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SMC1BQ8NDV3 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 SNORD14B-201ENST00000364533 90 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 RNU6-217P-201ENST00000384164 104 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 MIR34A-201ENST00000385130 110 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 SNORA40C-201ENST00000391285 128 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 MTCYBP4-201ENST00000401524 249 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 AL591034.1-201ENST00000407447 340 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 RNU4-14P-201ENST00000410858 122 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 RNA5SP184-201ENST00000411071 108 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 AC017079.2-201ENST00000416102 485 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 SKA2P1-201ENST00000425592 390 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 AL078601.1-201ENST00000444542 271 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 RN7SL594P-201ENST00000470590 287 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 TRBV12-2-201ENST00000489763 344 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 RNU6-572P-201ENST00000516724 80 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 Y_RNA.718-201ENST00000517110 102 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 MIR3186-201ENST00000577404 85 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 MIR5690-201ENST00000583739 73 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 AL355598.1-201ENST00000604169 202 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 AC007938.3-201ENST00000604965 623 ntBASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.97□□□□□ -1.77
SMC1BQ8NDV3 FTX_3.1-201ENST00000610451 147 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms