Protein–RNA interactions for Protein: Q6ZNE9

RUFY4, RUN and FYVE domain-containing protein 4, humanhuman

Predictions only

Length 571 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY4Q6ZNE9 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
RUFY4Q6ZNE9 MAPK10-372ENST00000641954 3413 ntBASIC4.26□□□□□ -1.73
RUFY4Q6ZNE9 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RUFY4Q6ZNE9 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.26□□□□□ -1.73
RUFY4Q6ZNE9 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RUFY4Q6ZNE9 FAM35BP-202ENST00000497389 3337 ntBASIC4.26□□□□□ -1.73
RUFY4Q6ZNE9 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RUFY4Q6ZNE9 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 Y_RNA.47-201ENST00000362697 108 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 Y_RNA.152-201ENST00000363578 100 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 RNU6-99P-201ENST00000364721 107 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 RNU6-72P-201ENST00000384285 79 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 MIR521-1-201ENST00000384902 87 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 MIR34B-201ENST00000385076 84 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 RPS29P13-201ENST00000402041 169 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 RPL26P27-201ENST00000414397 437 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 HMGB1P37-201ENST00000439613 609 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 RN7SL93P-201ENST00000463035 293 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 AK3P2-201ENST00000507976 429 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 AC026726.1-201ENST00000512859 601 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 Y_RNA.687-201ENST00000516558 91 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 AC144568.1-201ENST00000520139 137 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 AL355297.3-201ENST00000604082 446 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 U6.99-201ENST00000637524 83 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 MTND5P9-201ENST00000503854 1755 ntBASIC4.25□□□□□ -1.73
RUFY4Q6ZNE9 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 MTND5P27-201ENST00000428871 1720 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 FTLP6-201ENST00000355274 422 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 Y_RNA.153-201ENST00000363615 91 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 DEFB109C-201ENST00000382575 264 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 DEFB109B-201ENST00000382656 264 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 Y_RNA.526-201ENST00000384572 110 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 MIR3074-201ENST00000384885 81 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 RNU6-823P-201ENST00000391042 103 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 HMGN2P8-201ENST00000391458 268 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 U3.42-201ENST00000408746 214 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AL035423.1-201ENST00000420331 213 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AL353997.1-201ENST00000432936 108 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 HMGN2P13-201ENST00000476476 274 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 MRPS35P2-201ENST00000508242 191 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AC104619.4-201ENST00000510773 249 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AC010186.2-204ENST00000537668 439 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 HSBP1P1-201ENST00000555205 166 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AC103996.1-201ENST00000555468 102 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 MIR5701-3-201ENST00000578890 82 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 MIR5701-1-201ENST00000585138 82 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AC012468.1-201ENST00000604888 430 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AC007179.3-201ENST00000604976 235 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 MIR5701-2-201ENST00000615634 82 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 MIR4272-201ENST00000635924 64 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 U2.21-201ENST00000637295 81 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AC091812.1-201ENST00000432235 1948 ntBASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
RUFY4Q6ZNE9 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 AL672296.1-201ENST00000427780 2158 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 MIR423-201ENST00000362201 94 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 RNU6-595P-201ENST00000363944 107 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 Y_RNA.193-201ENST00000363979 102 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 RNA5SP72-201ENST00000364442 117 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 Y_RNA.556-201ENST00000384677 113 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 MIR325-201ENST00000385260 98 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 MIR199A2-201ENST00000385289 110 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 U3.37-201ENST00000408528 213 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 RNA5SP31-201ENST00000411144 127 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 HMGN2P31-201ENST00000432430 273 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 AC124916.1-201ENST00000444020 547 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 AL353752.1-201ENST00000454946 260 ntBASIC4.23□□□□□ -1.73
RUFY4Q6ZNE9 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 269.3 ms